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Robaina
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MetaTag
metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
https://robaina.github.io/MetaTag/
Apache License 2.0
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113 add usage docs and examples
#114
Robaina
closed
1 year ago
1
Add usage docs and examples
#113
Robaina
closed
1 year ago
0
95 handle log terminal messages
#112
Robaina
closed
1 year ago
1
109 update docstrings
#111
Robaina
closed
1 year ago
0
Integrate JPLACEparser
#110
Robaina
opened
1 year ago
0
Update docstrings
#109
Robaina
closed
1 year ago
0
107 update docs
#108
Robaina
closed
1 year ago
0
Update Docs
#107
Robaina
closed
1 year ago
0
99 use pathlib instead of os
#106
Robaina
closed
1 year ago
0
update versions in conda env
#105
Robaina
closed
1 year ago
1
Fix dependency versions in conda environment
#104
Robaina
closed
1 year ago
0
logger instead of print
#103
Robaina
closed
1 year ago
1
Use logger instead of print
#102
Robaina
closed
1 year ago
0
add docs
#101
Robaina
closed
1 year ago
0
Build Docs
#100
Robaina
closed
1 year ago
0
Use pathlib instead of os
#99
Robaina
closed
1 year ago
0
96 compose minimal pipeline
#98
Robaina
closed
1 year ago
0
96 compose minimal pipeline
#97
Robaina
closed
1 year ago
0
Compose minimal pipeline
#96
Robaina
closed
1 year ago
0
Handle log / terminal messages
#95
Robaina
closed
1 year ago
0
User logger instead of print throughout code base
#94
Robaina
closed
1 year ago
0
92 re-structure project and rename tool
#93
Robaina
closed
1 year ago
0
Re-structure project and rename tool
#92
Robaina
closed
1 year ago
0
Install phyloplacement with poetry?
#91
Robaina
closed
1 year ago
1
refactor pep8
#90
Robaina
closed
1 year ago
0
Add pynteny to makedatabase_struc
#89
Robaina
opened
1 year ago
0
refactorr
#88
Robaina
closed
1 year ago
0
Refactor code prior to repo publication
#87
Robaina
closed
1 year ago
0
Integrate Pynteny in makedatabase.py
#86
Robaina
closed
1 year ago
0
error when relabelling the newick tree with the placements
#85
micronuria
closed
1 year ago
1
Modify automated sequence data type checking
#84
Robaina
closed
1 year ago
1
problem to print help of makedatabase.py
#83
micronuria
closed
1 year ago
3
new error using papara
#82
micronuria
closed
2 years ago
7
Check CART classification model for nifH
#81
Robaina
closed
2 years ago
3
Replace filterFastaByIDs by new implementation
#80
Robaina
closed
1 year ago
0
Match query sequence duplicates to classified queries in labelplacements.py
#79
Robaina
closed
2 years ago
0
Match query sequence duplicates to classified queries in labelplacements.py
#78
Robaina
closed
2 years ago
1
Filtering out placements
#77
Robaina
closed
2 years ago
6
ValueError in makedatabase.py
#76
micronuria
closed
2 years ago
2
Export list of queries with the "right" function in countplacements.py
#75
Robaina
closed
2 years ago
0
Export list of queries with the "right" function in countplacements.py
#74
Robaina
closed
2 years ago
1
70-filter-placements-by-placement-distance-+-deal-with-multiple-placement-locations-for-a-single-query
#73
Robaina
closed
2 years ago
0
Conflicts between numerical reference labels and internal node labels in gappa examine assign
#72
Robaina
closed
2 years ago
1
Query names no longer appear in labelplacements.py output table
#71
Robaina
closed
2 years ago
0
Filter placements by placement distance + Deal with multiple placement locations for a single query
#70
Robaina
closed
2 years ago
6
Query names no longer appear in labelplacements.py output table
#69
Robaina
closed
2 years ago
0
Conflicts between numerical reference labels and internal node labels in gappa examine assign
#68
Robaina
closed
2 years ago
0
Small function to be added to the main jupyter nb for clusters' definition
#67
micronuria
closed
2 years ago
1
labelplacement error in gappa
#66
gecko1990
closed
2 years ago
3
Enable passing arguments to hmmer from makedatabase.py
#65
Robaina
closed
2 years ago
0
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