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Roleren
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ORFik
MIT License
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QCreport(df.rfp) throws an error, when working with ribo-seq data
#135
yeroslaviz
closed
1 year ago
3
Update Annotation_Alignment.Rmd
#134
yeroslaviz
closed
1 year ago
0
Annotation_Alignment vignette typos
#133
yeroslaviz
closed
1 year ago
0
Coverage plots using ORFiK and RiboCrypt
#132
yeroslaviz
closed
1 year ago
10
shiftFootprintsByExperiment in the vignette does not work
#131
yeroslaviz
closed
1 year ago
7
STAR.index for small genomes
#130
yeroslaviz
closed
1 year ago
5
download.SRA.metadata throws an error
#129
yeroslaviz
closed
1 year ago
26
Can ORFik be used without RNA-Seq?
#128
yeroslaviz
closed
1 year ago
8
FindORFsFasta frame!
#127
Fedeluppi
closed
1 year ago
2
computeFeatures() doesn't not work with GAlignmentPairs
#126
matanel-y
closed
1 year ago
3
STAR.align.folder() STAR Index Error
#125
matanel-y
closed
8 months ago
11
findORFsFasta() error: identifying wrong start codon & stop codon
#124
chenghongdeng
closed
1 year ago
1
Error in shiftFootprints
#123
mahabubp
closed
2 years ago
25
download.SRA.metadata dont work
#122
xiayh17
closed
2 years ago
2
ORFikQC() error
#121
Braulium
closed
1 year ago
2
getGenomeAndAnnotation error
#120
tamerbio
closed
2 years ago
18
Handling nested uORFs
#119
joegage
closed
2 years ago
6
Added proper JSON parsing to trimming.table
#118
przester
closed
3 years ago
0
`findUORFs` fails on hg38 with `Error in .check_exon_chrom(tx1)`
#117
edikedik
closed
3 years ago
2
could not find function "detectCores"
#116
bartma11
closed
3 years ago
2
How to get count tables for Genes rather than trancript?
#115
QianzhaoJ
closed
3 years ago
6
Functions "findNewTSS" and "computeFeaturesCage" are not available in the current ORFik installation in my system.
#114
mayank-singh-sikarwar
closed
3 years ago
6
Have no function 'bedToGR'
#113
MuradOmarov
closed
3 years ago
2
fix multiqc
#112
JokingHero
closed
3 years ago
0
fix crashes of R with data.table
#111
JokingHero
closed
3 years ago
0
fix errors in te_analysis and QCRibo plot
#110
JokingHero
closed
3 years ago
0
working now, tests pass
#109
JokingHero
closed
3 years ago
0
Fix png
#108
JokingHero
closed
3 years ago
0
fixed previous merge
#107
JokingHero
closed
3 years ago
0
make the default plot of pdf type, but also an option to change
#106
JokingHero
closed
3 years ago
0
findORFsFasta gives wrong start and stop codon
#105
MaxLev
closed
3 years ago
5
asTX not in namespace
#104
hsinyenwu
closed
3 years ago
2
Getting DNA fasta sequences of ORFs from a "fasta" file?
#103
loukesio
closed
3 years ago
11
Interesting behavior of the findMapORFs function
#102
hsinyenwu
closed
4 years ago
5
groupGRangesBy() requires names sorted granges
#101
m-swirski
closed
4 years ago
3
coveragePerTiling(..., as.data.table = TRUE, keep.names = TRUE) strips names
#100
m-swirski
opened
4 years ago
8
reason for length(extension) == 1L condition in extendLeaders and extendTrailers
#99
m-swirski
closed
4 years ago
4
GAlignments collapsing with addScoreColumn
#98
m-swirski
closed
4 years ago
14
shiftFootprints on GAlignments reads doesn't work correctly for gapped reads
#97
m-swirski
closed
4 years ago
7
detectRibosomeShifts
#96
m-swirski
closed
4 years ago
3
startRegion "upstream" not working
#95
m-swirski
closed
4 years ago
5
P-site adjustment and ORFscore
#94
ashakru
closed
4 years ago
7
experiment update
#93
Roleren
closed
5 years ago
0
docFix
#92
Roleren
closed
5 years ago
0
Expand experiment
#91
Roleren
closed
5 years ago
0
first commit experiment
#90
Roleren
closed
5 years ago
0
change of ownership commit
#89
Roleren
closed
5 years ago
0
Or fupdate
#88
Roleren
closed
5 years ago
0
Vignette info
#87
Roleren
closed
5 years ago
0
RNAseq strand information in calculating Translation efficiency
#86
sunyumail93
closed
5 years ago
5
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