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Rosemeis
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pcangsd
Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
GNU General Public License v3.0
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Large log likelihood when running Admixture
#42
bpbentley
opened
3 years ago
2
PCA performance with low depth and low sample size
#41
nicolas931010
closed
3 years ago
6
Add a -sites flag
#40
silastittes
opened
3 years ago
0
Selection scan power?
#39
mpinsky
opened
4 years ago
8
Problem running pcangsd on mac because of zcat
#38
elizeng
closed
4 years ago
4
stuck at "loading site information"
#37
z0on
opened
4 years ago
0
gzip: stdout: Broken pipe
#36
DrLaurenCWhite
closed
4 years ago
1
How to get the proportion of variances explained by PCs?
#35
cteenis
closed
4 years ago
2
PCAngsd -selection error
#34
jenncoughlan
closed
4 years ago
3
pcangsd error
#33
biozzq
closed
4 years ago
1
cythonizing reader.pyx
#32
ovidp
opened
4 years ago
0
dropping samples function?
#31
devonorourke
opened
4 years ago
3
pop.info file - order of samples?
#30
TeresaPegan
closed
4 years ago
2
pcangsd inbreedSites fails
#29
jonaszierer
closed
4 years ago
5
How to get PCs from the covariance matrix
#28
clairemerot
closed
4 years ago
1
python pcangsd.py -h fail with ImportError: /home/ec2-user/pcangsd2/pcangsd/reader.cpython-37m-x86_64-linux-gnu.so: undefined symbol: omp_get_thread_num error
#27
Callithrix-omics
closed
4 years ago
6
ZeroDivisionError: float division
#26
zyxplus
closed
4 years ago
5
ValueError: ndarray is not C-contiguous
#25
debjyoti88
closed
4 years ago
2
negative dimensions are not allowed
#24
zyxplus
closed
4 years ago
3
Can linked sites influence pcangsd result?
#23
biozzq
closed
4 years ago
2
specify a region on which pcangsd will run
#22
clairemerot
closed
4 years ago
2
Segmentation fault estimating covariance matrix
#21
OliverPStuart
closed
4 years ago
5
Clarification regarding format of the covariance matrix for V0.98
#20
albinap
closed
4 years ago
5
Feature request: option to select a subset of individuals
#19
ariloytynoja
closed
4 years ago
2
Single-precision types in `eigs` and `eighs`
#18
sunnvor
closed
5 years ago
2
command error during selection scan
#17
Callithrix-omics
closed
4 years ago
1
PCAngsd npy matrix not working in R
#16
Giovannino1984
closed
5 years ago
1
-sites_save not printing correctly?
#15
alexpiper
closed
5 years ago
2
Genotype calling error?
#14
brunoasm
closed
5 years ago
2
Inferring per-individual inbreeding coefficients between very distant species
#13
Gongmian784
closed
5 years ago
3
Error pcangsd.py cannot copy sequence to array
#12
jdaron
closed
5 years ago
1
diagonal of kinship matrix
#11
ovidp
closed
4 years ago
1
Allow running admixture analysis with multiple K in one run
#10
kdm9
opened
6 years ago
2
Fix -allocate_sites with beagle
#9
kdm9
closed
6 years ago
0
Empty string "" in various outputs
#8
kdm9
closed
6 years ago
2
error when sample size smaller than 15
#7
biozzq
closed
6 years ago
9
readgzipbeagle index error
#6
biozzq
closed
6 years ago
2
Invalid syntax running issue
#5
gmkov
closed
6 years ago
1
Citation information
#4
dwinter
closed
6 years ago
2
pcangsd.py -h fails with numba error
#3
samfux84
closed
6 years ago
2
NameError: global name 'rmse' is not defined
#2
silvewheat
closed
6 years ago
1
how to get the eigenvector and eigenvalue?
#1
silvewheat
closed
6 years ago
1
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