issues
search
Rust-Wellcome
/
FasMan
A re-write (+ extras) of Python scripts, used in Tree of Life, into a single Rust script.
3
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Split FASTA by x
#51
DLBPointon
opened
5 days ago
6
Header cleaning
#50
DLBPointon
opened
2 months ago
0
Split long chromosomes into >2Gb chunks
#49
DLBPointon
opened
2 months ago
1
Dp24 exclude file
#48
DLBPointon
closed
2 months ago
2
Add an exclusion list file to filterfasta
#47
DLBPointon
closed
2 months ago
0
Add yaml_validator tests for validate_paths and get_file_list
#46
stevieing
opened
3 months ago
0
Create tests for the yaml validator
#45
stevieing
opened
3 months ago
0
0.1.5
#44
DLBPointon
closed
3 months ago
0
Dp24 validateyaml
#43
DLBPointon
closed
3 months ago
0
Patch dev temporarily to fix iterator failure
#42
dasunpubudumal
closed
3 months ago
0
22 changes
#41
stevieing
closed
3 months ago
0
ID some FASTA specific functions to add to FasMan
#40
DLBPointon
opened
4 months ago
0
Noodles-indexed reader requires TSV
#39
DLBPointon
opened
4 months ago
0
Updates to YAML_Validator
#38
DLBPointon
closed
3 months ago
0
Create main.yml
#37
DLBPointon
closed
4 months ago
0
tpf_fasta requires an fai
#36
DLBPointon
opened
4 months ago
0
exclude_seq should use some kind of regex to also extract_seq
#35
DLBPointon
opened
4 months ago
1
CICD: Automate Docs getting generated and uploaded to a Pages instance
#34
DLBPointon
opened
4 months ago
1
Some optimisations
#33
dasunpubudumal
opened
5 months ago
0
Optimisations
#32
dasunpubudumal
opened
5 months ago
4
Add tests for tpf_fasta
#31
stevieing
closed
3 months ago
0
main - dev parity
#30
DLBPointon
closed
5 months ago
0
Improve the documentation significantly
#29
DLBPointon
opened
5 months ago
0
Improve logging in the application
#28
dasunpubudumal
opened
5 months ago
0
IMPROVEMENT: Replace print statements with proper logging
#27
DLBPointon
opened
6 months ago
1
Splitsize
#26
DLBPointon
closed
5 months ago
0
24 implement file reader to read files chunk by chunk
#25
dasunpubudumal
opened
6 months ago
0
Implement file reader to read files chunk-by-chunk
#24
dasunpubudumal
opened
6 months ago
0
Refactoring with Clap enums
#23
dasunpubudumal
closed
6 months ago
0
Create tests for tpf_fasta
#22
stevieing
closed
3 months ago
1
Added tests directory
#21
stevieing
closed
5 months ago
1
CICD: Subset the input data for tpf_curate
#20
DLBPointon
closed
4 months ago
1
SUBWORKFLOW: genecsvs
#19
DLBPointon
closed
6 months ago
0
Dp24 splitby
#18
DLBPointon
closed
6 months ago
0
SUBWORKFLOW: geneset_csvs
#17
DLBPointon
closed
5 months ago
1
Dev
#16
DLBPointon
closed
6 months ago
0
UPDATE: yaml_validator
#15
DLBPointon
opened
6 months ago
4
SUBWORKFLOW: Split by count
#14
DLBPointon
closed
6 months ago
2
SUBWORKFLOW: Split by size
#13
DLBPointon
closed
5 months ago
2
SUBWORKFLOW: Profile fasta file
#12
DLBPointon
opened
6 months ago
2
CICD: Actually add a testing suite
#11
DLBPointon
closed
5 months ago
0
CICD: CI workflow to add testing
#10
DLBPointon
closed
6 months ago
1
SUBWORKFLOW: Merge Haplotypes
#9
DLBPointon
opened
6 months ago
0
Messed up
#8
DLBPointon
closed
6 months ago
0
Update test-lint.yml
#7
DLBPointon
closed
7 months ago
0
Update test-lint.yml
#6
DLBPointon
closed
7 months ago
0
Messed up
#5
DLBPointon
closed
7 months ago
0
Messed up
#4
DLBPointon
closed
7 months ago
0
removing already build binary and adding version name
#3
DLBPointon
closed
9 months ago
1
Update test-lint.yml
#2
DLBPointon
closed
1 year ago
0
Next