git clone https://github.com/SATAY-LL/comparative-analysis-among-strains.git
cd Data-analysis-multiple-strains
conda env create --file environment.yml
conda activate satay-analysis
This is a bash code to convert comma separated files to tab separated files, if needed.
cat oldfile.txt | tr '[,]' '[\t]' > newfile.txt
jupytext
jupytext --to py <your-notebook>.ipynb
git add <your-notebook>.py
git commit -m "<commit -message>"
This way of versioning the notebooks are taken from this blog Version Control With Jupyter Notebook.