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StellarPGx
Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
MIT License
29
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6
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TPMT genotypes
#35
lisosome
closed
1 month ago
2
WES analysis
#34
diegomd90
opened
1 month ago
1
Several errors in a large cohort
#33
anh151
opened
7 months ago
8
Update CYP2D6 allele definition *6
#32
wenjiany
closed
7 months ago
1
/path/to error: while mounting /path/to: mount source /path/to doesn't exist
#31
roofya
closed
7 months ago
16
terminated with an error exit status (140)
#30
muhligs
closed
1 year ago
21
Failed to find test file HG03130.bam
#29
muhligs
closed
1 year ago
2
No result when using cram files
#28
tija94
closed
1 year ago
12
S
#27
kiflu-23
closed
1 year ago
2
StellarPGx treating PCR amplicons as gene copy
#26
kiflu-23
closed
1 year ago
3
error with "nextflow run main.nf -profile standard,test"
#25
genmaibutter
closed
7 months ago
4
StellarPGx v1.2.5 incorrectly calls GeT-RM samples NA10847, NA19920 and NA19908 that were correctly called by the original version
#24
VasilisFlouris
closed
7 months ago
1
Add StellarPGx version number in `.alleles` output file
#23
rodrigotoro
opened
1 year ago
1
Problems running
#22
anh151
closed
7 months ago
8
WES support
#21
krukanna
opened
1 year ago
4
Copy number calculation
#20
TonyLupara
closed
1 year ago
3
Genotype explanation
#19
krukanna
closed
1 year ago
4
Metaboliser status is not generated other than cyp2d6 gene in summary alleles result
#18
Shubhamverma-bioinfo
closed
2 years ago
2
How to run StellarPGX on all CYP genes at once
#17
Shubhamverma-bioinfo
closed
2 years ago
2
Wrong CYP2B6 call
#16
TonyLupara
closed
2 years ago
3
Question: Running StellarPGx within Docker
#15
ajpar94
closed
7 months ago
9
Process `call_stars ()` terminated with an error exit status (1)
#14
TonyLupara
closed
2 years ago
6
main.nf - No such variable: var_ch1
#13
TonyLupara
closed
2 years ago
1
CYP2D6 Alignment on Alt region
#12
NTNguyen13
closed
2 years ago
4
json output
#11
wenjiany
closed
2 years ago
2
File _var_1/chr10/094935000-094990000.vcf.gz not created
#10
NTNguyen13
closed
2 years ago
2
Docker run -- bam.bai file is missing from get_depth step
#9
pauline-ng
closed
2 years ago
2
Container Creation Failed
#8
joseph-yclam
closed
2 years ago
6
Error Executing Process and User Namespace Error
#7
joseph-yclam
closed
2 years ago
9
Checking SV calls for CYP2D6
#6
mgonzalezporta
opened
2 years ago
1
Porting the nextflow workflow to DSL2
#5
mgonzalezporta
closed
7 months ago
21
CYP2D6 call_stars terminated with an error exit status
#4
mgonzalezporta
closed
2 years ago
6
ERROR: Unknown image format/type -> Test run does not seem to work
#3
pmginacio
closed
2 years ago
2
error running example on osx
#2
mathob
closed
3 years ago
1
Process `call_stars (SIM001)` terminated with an error exit status (1)
#1
roman-tremmel
closed
3 years ago
11