SBIMB StellarPGx issues

SBIMB / StellarPGx

Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.

MIT License

30 stars 7 forks source link

issues

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Difference in test3.bed for cyp2d6 hg38

#36 abdulfaqihalm closed 3 weeks ago
2
TPMT genotypes

#35 lisosome closed 3 months ago
2
WES analysis

#34 diegomd90 opened 4 months ago
1
Several errors in a large cohort

#33 anh151 opened 10 months ago
8
Update CYP2D6 allele definition *6

#32 wenjiany closed 10 months ago
1
/path/to error: while mounting /path/to: mount source /path/to doesn't exist

#31 roofya closed 10 months ago
16
terminated with an error exit status (140)

#30 muhligs closed 1 year ago
21
Failed to find test file HG03130.bam

#29 muhligs closed 1 year ago
2
No result when using cram files

#28 tija94 closed 1 year ago
12
S

#27 kiflu-23 closed 1 year ago
2
StellarPGx treating PCR amplicons as gene copy

#26 kiflu-23 closed 1 year ago
3
error with "nextflow run main.nf -profile standard,test"

#25 genmaibutter closed 10 months ago
4
StellarPGx v1.2.5 incorrectly calls GeT-RM samples NA10847, NA19920 and NA19908 that were correctly called by the original version

#24 VasilisFlouris closed 10 months ago
1
Add StellarPGx version number in `.alleles` output file

#23 rodrigotoro opened 1 year ago
1
Problems running

#22 anh151 closed 10 months ago
8
WES support

#21 krukanna opened 2 years ago
4
Copy number calculation

#20 TonyLupara closed 2 years ago
3
Genotype explanation

#19 krukanna closed 2 years ago
4
Metaboliser status is not generated other than cyp2d6 gene in summary alleles result

#18 Shubhamverma-bioinfo closed 2 years ago
2
How to run StellarPGX on all CYP genes at once

#17 Shubhamverma-bioinfo closed 2 years ago
2
Wrong CYP2B6 call

#16 TonyLupara closed 2 years ago
3
Question: Running StellarPGx within Docker

#15 ajpar94 closed 10 months ago
9
Process `call_stars ()` terminated with an error exit status (1)

#14 TonyLupara closed 2 years ago
6
main.nf - No such variable: var_ch1

#13 TonyLupara closed 2 years ago
1
CYP2D6 Alignment on Alt region

#12 NTNguyen13 closed 2 years ago
4
json output

#11 wenjiany closed 2 years ago
2
File _var_1/chr10/094935000-094990000.vcf.gz not created

#10 NTNguyen13 closed 2 years ago
2
Docker run -- bam.bai file is missing from get_depth step

#9 pauline-ng closed 2 years ago
2
Container Creation Failed

#8 joseph-yclam closed 2 years ago
6
Error Executing Process and User Namespace Error

#7 joseph-yclam closed 2 years ago
9
Checking SV calls for CYP2D6

#6 mgonzalezporta opened 2 years ago
1
Porting the nextflow workflow to DSL2

#5 mgonzalezporta closed 10 months ago
21
CYP2D6 call_stars terminated with an error exit status

#4 mgonzalezporta closed 3 years ago
6
ERROR: Unknown image format/type -> Test run does not seem to work

#3 pmginacio closed 3 years ago
2
error running example on osx

#2 mathob closed 3 years ago
1
Process `call_stars (SIM001)` terminated with an error exit status (1)

#1 roman-tremmel closed 3 years ago
11