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SBU-BMI
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tumor-til-survival-analysis
Scripts to run analysis of tumor/TILs.
Apache License 2.0
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version of pipeline not shown when running from other directory
#20
kaczmarj
opened
1 year ago
0
need to align .sh calls with new arg counts
#19
lthealy
opened
1 year ago
1
subtype specific code needs new R dependency
#18
lthealy
opened
1 year ago
1
error when using wsinfer outputs -- no matching files
#17
kaczmarj
opened
1 year ago
7
updates TIL_align version
#16
lthealy
closed
1 year ago
1
updated hash to newest build
#15
lthealy
closed
1 year ago
0
Docker image not compatible with arm64 Mac (M1)
#14
lthealy
closed
1 year ago
3
rework logic for choosing apptainer or docker
#13
kaczmarj
closed
1 year ago
0
use default singularity cache dir + test if singularity can be used
#12
kaczmarj
closed
1 year ago
0
[BUG] error when aligning wsinfer output: "'data' must be of a vector type, was 'NULL'"
#11
kaczmarj
closed
1 year ago
3
allow use of this pipeline without survival information
#10
kaczmarj
opened
1 year ago
1
clarify readme for run-v1.sh
#9
kaczmarj
closed
1 year ago
0
clarify readme
#8
kaczmarj
closed
1 year ago
0
add survival output generation
#7
kaczmarj
closed
1 year ago
4
add analysis workflow integration
#6
lthealy
closed
1 year ago
6
test docker version of v2 script
#5
kaczmarj
opened
1 year ago
0
test gpu docker
#4
kaczmarj
closed
1 year ago
0
add survival analysis to both scripts
#3
kaczmarj
closed
1 year ago
0
[BUG] unbound variable analysis_outout
#2
kaczmarj
closed
1 year ago
0
do not prompt to use a gpu in v1 script
#1
kaczmarj
closed
1 year ago
0