Sage-Bionetworks sageseqr issues

Sage-Bionetworks / sageseqr

A workflow for exploring and analyzing RNA-seq data.

https://sage-bionetworks.github.io/sageseqr/

MIT License

3 stars 6 forks source link

issues

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draft fix

#184 jgockley62 opened 4 months ago
0
merge checks fix

#183 jgockley62 closed 4 months ago
0
Update pkgdown.yaml

#182 jgockley62 closed 4 months ago
0
Update pkgdown.yaml

#181 jgockley62 closed 4 months ago
0
Update pkgdown.yaml

#180 jgockley62 closed 4 months ago
0
Update pkgdown.yaml

#179 jgockley62 closed 4 months ago
0
Sexcheck dplyrbug

#178 jgockley62 closed 4 months ago
0
Supervise model

#177 jgockley62 closed 2 years ago
0
Add c is

#176 jgockley62 closed 2 years ago
0
Numeric interaction de

#175 jgockley62 closed 2 years ago
0
[Security] Workflow R-CMD-check.yaml is using vulnerable action actions/checkout

#174 igibek opened 2 years ago
0
[Security] Workflow R-CMD-check.yaml is using vulnerable action actions/checkout

#173 akulpillai opened 2 years ago
0
Name Jake as maintainer

#172 kelshmo closed 2 years ago
0
Fix de formula

#171 jgockley62 closed 2 years ago
0
Interaction terms

#170 kelshmo opened 3 years ago
0
Build custom gene annotation file

#169 jgockley62 closed 2 years ago
3
Make biomart query permissive to more organisms

#168 kelshmo opened 3 years ago
0
sex_plot_pca() errors if only X or Y in counts

#167 daisyhan97 opened 3 years ago
0
Update the plan when the config changes

#166 kelshmo opened 3 years ago
0
Issue #24 - Test for Unique EnsemblIDs in Config biomaRt

#165 daisyhan97 closed 2 years ago
2
Vignette for how to structure input data

#164 kelshmo opened 3 years ago
1
force first line to be header

#163 kelshmo closed 3 years ago
0
add PAT to all gh actions

#162 kelshmo closed 3 years ago
0
test pat increasing rate limit

#161 kelshmo closed 3 years ago
0
Output residuals matrix

#160 kelshmo closed 3 years ago
1
Accept a value to ignore covariates when passed to stepwise_regression

#159 kelshmo opened 3 years ago
0
fix model code chunk

#158 kelshmo closed 3 years ago
0
ISSUE4 - Checks for duplicate SampleIDs

#157 daisyhan97 closed 3 years ago
1
Patch plan

#156 kelshmo closed 3 years ago
1
Adds meta-analysis

#155 kelshmo opened 3 years ago
0
Targets migration

#154 jgockley62 closed 3 years ago
7
Add author

#153 kelshmo closed 3 years ago
0
Differential expression parallelization

#152 jgockley62 closed 3 years ago
0
Filter_genes() only uses the first conditions list object

#151 jgockley62 opened 3 years ago
1
pkg clean

#150 kelshmo opened 3 years ago
3
Accept a value to ignore covariates when passed to differential_expression

#149 kelshmo opened 3 years ago
1
Add differential_expression as step in the plan

#148 kelshmo closed 3 years ago
7
Fix model

#147 kelshmo closed 3 years ago
0
Improve markdown formatting

#146 kelshmo closed 3 years ago
0
Error if metadata lacks more than 2 levels

#145 kelshmo opened 3 years ago
0
clarify what is required of rownames in these objects.

#144 kelshmo closed 3 years ago
0
argument order incorrect

#143 kelshmo closed 3 years ago
0
remove redundant argument from config file

#142 kelshmo closed 3 years ago
0
Surface parameters from filter_genes in plan and run script

#141 kelshmo closed 3 years ago
0
Expose gene filtering as an input to plan

#140 kelshmo closed 3 years ago
0
identify_outliers() not handling many discrete values

#139 kelshmo opened 3 years ago
1
Plot sex_check PCA even if there is a warning

#138 kelshmo opened 3 years ago
0
Fix markdown formatting

#137 kelshmo closed 3 years ago
0
Improve plot readability

#136 kelshmo closed 3 years ago
0
Label discordant samples

#135 kelshmo closed 3 years ago
2