SainsburyWellcomeCentre ara_tools issues

SainsburyWellcomeCentre / ara_tools

Analysis of mouse brain STP data with respect to the Allen Reference Atlas

GNU Lesser General Public License v3.0

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issues

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day index dir name should increment only for registrations within that day

#22 raacampbell closed 2 years ago
1
Likely bug -- sparse points may not follow new directory layout

#21 raacampbell opened 4 years ago
0
Document new ARAregister features

#20 raacampbell opened 4 years ago
0
aratools.tidyRegistrations should list more info about existing registrations

#19 raacampbell closed 4 years ago
8
New layout for registration directories

#18 raacampbell closed 4 years ago
3
Update amap URL

#17 adamltyson closed 4 years ago
0
Add option to smooth sample image

#16 raacampbell closed 4 years ago
2
Copied image into expanded matrix to ensure the image is rotated abou…

#15 stevenjwest closed 5 years ago
1
Development

#14 stevenjwest closed 5 years ago
0
Add channel selection as an input argument

#13 raacampbell closed 5 years ago
1
Record which channel was registered and make it possible to choose which to register

#12 raacampbell closed 5 years ago
0
rescaleAllSparsePoints needs to make logging .mat file

#11 raacampbell opened 5 years ago
2
settings file in repo can mask that in user dir

#10 raacampbell opened 5 years ago
0
Switch from mhd to tiff

#9 raacampbell closed 5 years ago
2
Add options to highlightAreaPlot

#8 ablot closed 6 years ago
0
group layers also groups thalamic nuclei

#7 ablot opened 6 years ago
1
Add dvpt branch

#6 ablot closed 6 years ago
0
This repository requires the single cell code also

#5 raacampbell closed 5 years ago
1
ARAregister fails if the downsampling step did not include downsampling of sparse data

#4 raacampbell closed 5 years ago
2
What is downSamplePointMatrix?

#3 raacampbell closed 6 years ago
1
There is not a good link between the traced data and the registered data

#2 raacampbell opened 7 years ago
0
Xylem atlas loading isn't portable

#1 raacampbell opened 7 years ago
0