Deep learning-based classification of the mouse estrous cycle stages, K. Sano and etal, 2020, Scientific Reports.
https://www.nature.com/articles/s41598-020-68611-0
SECREIT
Mouse Estrous Cycle Estimation
Prerequisites
- Python 3.6
- numpy 1.19.1
- opencv-python 4.1.1
- keras (tensorflow backend)== 2.2.4 (NOT 2.3)
- tensorflow 1.13.1
Overview
Model AUC (Performance)
SECREIT correctly classified competitive to two professionals
diestrus stage (D): 0.982
estrus stage (E): 0.979
proestrus stage (P): 0.962
Weight parameter
https://opac.ll.chiba-u.jp/da/curator/108041/weights.hdf5
Dataset
Example of file name
"D_a_14_e1_Auto2train.png"
① D: Estrous Stage. When the estrous stage is intermediate class, we described it using "", such as "D_E".
② a_14_e1: image id
③ Auto2: Name of Experiment. Auto2 and Auto3 was used for trainig. Auto1 was for validation and Auto4 is for test.
Dataset download
https://opac.ll.chiba-u.jp/da/curator/108041/D_part1.zip
https://opac.ll.chiba-u.jp/da/curator/108041/D_part2.zip
https://opac.ll.chiba-u.jp/da/curator/108041/D_part3.zip
https://opac.ll.chiba-u.jp/da/curator/108041/E.zip
https://opac.ll.chiba-u.jp/da/curator/108041/P.zip