Codes used for 'Transcription-coupled and epigenome-encoded mechanisms direct H3K4 methylation (2022)'
for codes for Supplementary Figure.5, please see Figure2 and 3.r
for codes for Supplementary Figure 9,10,11, please see Figure4.r
Upon multiple requests, we added the following list of genes in data/list_of_genes folder.
As a note for reproducibility, those lists can also be generated (as R object) by running Figure1.R L58- for ATX-marked genes, and by Supplementary_Figure3.R L8- for ATX-bound genes.
Can't find what you are looking for? Pardon my bad code annotation! Please ask us via "Issues" section of GitHub or contact soya[at]ucdavis.edu ;)