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SchlossLab
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Lesniak_Severity_mBio_2022
MIT License
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update make to use sra files
#85
NLesniak
closed
2 years ago
0
fix typo in kaitlins name
#84
NLesniak
closed
2 years ago
0
fix otu typo
#83
NLesniak
closed
2 years ago
0
update manuscript and submission files with reviewer feedback
#82
NLesniak
closed
2 years ago
0
incorporate reviewer feedback
#81
NLesniak
closed
2 years ago
0
add Table S1 legend to main text
#80
NLesniak
closed
2 years ago
0
incorporate PDS feedback into revision
#79
NLesniak
closed
2 years ago
0
update manuscript w/revisions
#78
NLesniak
closed
2 years ago
0
push manuscript updates to schloss repository
#77
NLesniak
closed
2 years ago
0
missing donor samples
#76
NLesniak
closed
3 years ago
2
Process donor seqs issue74
#75
NLesniak
closed
4 years ago
0
rerun donor samples through mothur
#74
NLesniak
closed
4 years ago
1
change mock community to hmp
#73
NLesniak
closed
4 years ago
0
Is this outcome specific to this strain of C diff?
#72
NLesniak
closed
2 years ago
0
what can explain the disease severity?
#71
NLesniak
closed
2 years ago
2
what happens with challenge?
#70
NLesniak
closed
2 years ago
0
do the initial communities vary?
#69
NLesniak
closed
2 years ago
0
OTU 13 - C difficile + other peptostreptococcus
#68
NLesniak
closed
3 years ago
3
Update lab master
#67
NLesniak
closed
4 years ago
0
final update to prediction files
#66
NLesniak
closed
7 years ago
0
final commit
#65
kjflynn
closed
7 years ago
0
Progress with determining if we can trust CFU data
#64
kjflynn
closed
7 years ago
0
toxin and histo code updated
#63
kjflynn
closed
7 years ago
0
histology scores and analysis
#62
kjflynn
closed
7 years ago
0
Issue with git pulling personal repo commits
#61
NLesniak
closed
7 years ago
0
added raw, processed, figure for histology results
#60
kjflynn
closed
7 years ago
0
figure 1 and 2 polished and built into plots
#59
kjflynn
closed
7 years ago
0
updated manuscript with citations and removed figure 5
#58
kjflynn
closed
8 years ago
0
mothur analysis notebook file uploaded
#57
kjflynn
closed
8 years ago
0
updated manuscriptwith 12_1 edits
#56
kjflynn
closed
8 years ago
0
manuscript draft 1 complete, minus nick paragraphs
#55
kjflynn
closed
8 years ago
0
updated manuscript with discussion
#54
kjflynn
closed
8 years ago
0
update to latest colonization prediction models
#53
NLesniak
closed
8 years ago
0
merging my code and paper changes to main repo
#52
kjflynn
closed
8 years ago
0
fix issues with tax_level.R and improve feature selection in predict_cfu.rmd
#51
NLesniak
closed
8 years ago
0
update prediction files, tax_file, and created cfu/wt loss file
#50
NLesniak
closed
8 years ago
0
updated submission with manuscript files
#49
kjflynn
closed
8 years ago
0
added paper documents
#48
kjflynn
closed
8 years ago
0
added updated plot code and paper outline doc
#47
kjflynn
closed
8 years ago
0
fixed make_meta code to work with un-subsampled file
#46
kjflynn
closed
8 years ago
0
update ROC plots
#45
NLesniak
closed
8 years ago
0
added gf_new.files for make_meta
#44
kjflynn
closed
8 years ago
0
updated filepaths in make scripts
#43
kjflynn
closed
8 years ago
0
Merge pull request #1 from SchlossLab/master
#42
kjflynn
closed
8 years ago
0
updated nmds and thetaYC code
#41
kjflynn
closed
8 years ago
0
updating mothur shared files
#40
kjflynn
closed
8 years ago
0
pulling changed files to my fork
#39
kjflynn
closed
8 years ago
0
pulling changed files to my fork
#38
kjflynn
closed
8 years ago
0
update aucrf severity classification model
#37
NLesniak
closed
8 years ago
0
Remove C. diff sequence and remake shared
#36
NLesniak
closed
8 years ago
0
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