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Schroeder-Lab
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Data
For pre-processing raw data (two-photon, ephys, bonsai, ...) and loading/saving data.
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Adding ephys stim
#53
florgf88
closed
8 months ago
0
added define_directories_dlc function
#52
gabdrashova
closed
10 months ago
1
Potential issue with F correction
#51
mariacozan
closed
11 months ago
1
minLength typeError
#50
mariacozan
closed
1 year ago
0
Registering Z stack with two channels
#49
mariacozan
closed
1 year ago
2
removed unnecessary imports
#48
mariacozan
closed
1 year ago
0
function to calculate pupil area from DLC csv
#47
mariacozan
closed
1 year ago
0
Plot improvements
#46
mariacozan
closed
1 year ago
0
Changes to correct_neuropil and plot improvements
#45
mariacozan
closed
1 year ago
0
Regarding Data/Bonsai/extract_data.py
#44
schroederlab
closed
1 year ago
0
added comments to metadata functions
#43
mariacozan
closed
1 year ago
0
F0 calculation
#42
mariacozan
closed
1 year ago
0
final error fixing
#41
mariacozan
closed
1 year ago
0
Output plots: improvements
#40
mariacozan
opened
1 year ago
0
function remove_zcorrected_faults
#39
mariacozan
closed
1 year ago
1
Function correct_zmotion: how to treat experiments with Z drift?
#38
mariacozan
closed
1 year ago
1
function _fill_plane_piezo in process_tiff: currDepth variable
#37
mariacozan
closed
1 year ago
0
function _register_zstack_frames: correction
#36
mariacozan
closed
1 year ago
1
function _register_swipe in process_tiff: unused input variable "progress"
#35
mariacozan
closed
1 year ago
0
Minor typo in extract_zprofiles: smooting_factor
#34
mariacozan
closed
1 year ago
0
Function _gauss in preprocess_traces
#33
mariacozan
closed
1 year ago
0
Function _moffat in preprocess_traces
#32
mariacozan
closed
1 year ago
1
Function _linear in preprocess_traces
#31
mariacozan
closed
1 year ago
0
Function register_zaxis in preprocess_traces
#30
mariacozan
closed
1 year ago
0
Registered and angled Z stack: potential problem with correcting for slant
#29
mariacozan
closed
1 year ago
1
Z stack correlation with frame: correlation threshold
#28
mariacozan
closed
1 year ago
1
Format of registerStacktoRef function
#27
mariacozan
closed
1 year ago
0
Register_zstack function improvements
#26
mariacozan
closed
1 year ago
3
Extract_zprofiles: improvements
#25
mariacozan
closed
1 year ago
1
Cell locations
#24
mariacozan
closed
1 year ago
1
improvements of linearAnalyticalSolution
#23
mariacozan
closed
1 year ago
2
Remove commented out code from correct_neuropil
#22
mariacozan
closed
1 year ago
0
Remove line with variable lowActivity from correct_neuropil function
#21
mariacozan
closed
1 year ago
0
Calculating F0
#20
mariacozan
closed
1 year ago
1
Set minLength to infinity
#19
mariacozan
closed
1 year ago
0
Signal length for each plane
#18
mariacozan
closed
1 year ago
0
Save original ROI ID
#17
mariacozan
closed
1 year ago
1
Improvements on previous comments
#16
mariacozan
closed
1 year ago
0
Added descripitions to the functions which return the piezo trace
#15
mariacozan
closed
1 year ago
0
Comments
#14
mariacozan
closed
1 year ago
0
Location of functions get_ops_file and get_piezo_data
#13
mariacozan
closed
1 year ago
1
Set folder_defs to ignore
#12
mariacozan
closed
1 year ago
1
Added comments and example csv
#11
mariacozan
closed
1 year ago
0
Make the preprocessing code compatible with all operating systems
#10
mariacozan
closed
1 year ago
1
Defining functions in folder_defs and preprocess_traces
#9
mariacozan
closed
1 year ago
1
GetCalciumAligned function
#8
mariacozan
closed
1 year ago
1
Commenting
#7
mariacozan
closed
1 year ago
2
Error when trying to plot the z Trace
#6
mariacozan
closed
1 year ago
1
Error in arduino processing
#5
mariacozan
closed
1 year ago
1
Error in calculation of delta_F_over_F
#4
schroederlab
closed
1 year ago
1
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