Closed LeonHafner closed 4 months ago
Hi :)
thanks for posting the issue!I will try to reproduce the error and let you know how to fix it.
Best, Nina
Hi @LeonHafner,
can you unzip the dbSNP file and try it again?
Can you pull our GitHub repo again? There was a hard coded path in the script runTests.sh to the intersection file, which explains why it was not found in the last test. I adapted the runTests.sh accordinly
I hope it will work for you now :)
Best, Nina
Thanks a lot, that solved it!
Best, Leon
Hi together, first of all, thanks for providing this amazing tool! I am currently trying to get my SNEEP installation running with the tests described in the documentation, but this results in an error. I have installed sneep 1.0 via conda. The command I run is the following:
I run it on the downloaded files from zenodo, additionally I'm using hg38 as the reference genome. The zenodo files, as well as the fasta are stored in
path/to/sneep
. The SNEEP GitHub directory is also cloned into this folder and is therefore located atpath/to/sneep/SNEEP
.It always terminates with the message that some file is invalid formatted. This is the output I get, I hope you can help me: