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SchulzLab / TEPIC

Annotation of genomic regions using transcription factor binding sites and epigenetic data
MIT License
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Error not reported with subfolders in --outDir param from INVOKE.R #33

Closed xpastor closed 4 years ago

xpastor commented 4 years ago

If the outDir param of the 'INVOKE.R' script contains subdirectories, the script neither creates the directory nor throws an error.

To overcome this, either 'recursive = TRUE' and 'showWarnings = FALSE' should be defined in dir.create(), or it should be stated in the documentation that the parameter does not accept subdirectories.

Florian411 commented 4 years ago

Thanks for the feedback. I've added the 'recursive=TRUE' setting to both INVOKE and DYNAMITE.