scikit-surgerynditracker

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scikit-surgerynditracker is a python interface for Northern Digital (NDI) trackers. It should work with Polaris Vicra, Spectra, and Vega optical trackers and Aurora electromagnetic trackers. Tracking data is output as NumPy arrays.

Author: Stephen Thompson

scikit-surgerynditracker is part of the SciKit-Surgery software project, developed at the Wellcome EPSRC Centre for Interventional and Surgical Sciences, part of University College London (UCL)_.

Installing

::

pip install scikit-surgerynditracker

Using

Configuration is done using Python libraries at instantiation. Invalid configuration should raise exceptions. Tracking data is returned in a set of lists, containing the port handles, timestamps, framenumbers, the tracking data and a tracking quality metric. By default tracking data is returned as a 4x4 NumPy array, though can be returned as a quaternion by changing the configuration.

::

from sksurgerynditracker.nditracker import NDITracker
SETTINGS = {
    "tracker type": "polaris",
    "romfiles" : ["../data/8700339.rom"]
        }
TRACKER = NDITracker(SETTINGS)

TRACKER.start_tracking()
port_handles, timestamps, framenumbers, tracking, quality = TRACKER.get_frame()
for t in tracking:
  print (t)
TRACKER.stop_tracking()
TRACKER.close()

See demo.py for a full example

Developing

Cloning ^^^^^^^

You can clone the repository using the following command:

::

git clone https://github.com/SciKit-Surgery/scikit-surgerynditracker

Running the tests ^^^^^^^^^^^^^^^^^

You can run the unit tests by installing and running tox:

::

pip install tox
tox

Contributing ^^^^^^^^^^^^

Please see the contributing guidelines_.

Useful links ^^^^^^^^^^^^

• Source code repository_
• Documentation_

Licensing and copyright

Copyright 2018 University College London. scikit-surgerynditracker is released under the BSD-3 license. Please see the license file_ for details.

Acknowledgements

Supported by Wellcome and EPSRC.

.. Wellcome EPSRC Centre for Interventional and Surgical Sciences: http://www.ucl.ac.uk/weiss .. source code repository: https://github.com/SciKit-Surgery/scikit-surgerynditracker .. Documentation: https://scikit-surgerynditracker.readthedocs.io .. SciKit-Surgery: https://www.github.com/SciKit-Surgery .. University College London (UCL): http://www.ucl.ac.uk/ .. Wellcome: https://wellcome.ac.uk/ .. EPSRC: https://www.epsrc.ac.uk/ .. contributing guidelines: https://github.com/SciKit-Surgery/scikit-surgerynditracker/blob/master/CONTRIBUTING.rst .. _license file: https://github.com/SciKit-Surgery/scikit-surgerynditracker/blob/master/LICENSE