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SciML
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SBMLToolkit.jl
SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit
https://docs.sciml.ai/SBMLToolkit/stable/
MIT License
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don't automatically complete systems on read
#167
ChrisRackauckas
opened
5 days ago
0
Flag to drop units
#166
oxinabox
opened
1 month ago
5
Fix Cobraexa URL
#165
oxinabox
closed
1 month ago
2
CompatHelper: bump compat for SymbolicUtils to 3, (keep existing compat)
#164
github-actions[bot]
closed
1 month ago
3
Support Catalyst v14
#163
paulflang
closed
1 month ago
0
CompatHelper: bump compat for Catalyst to 14, (keep existing compat)
#162
github-actions[bot]
closed
1 month ago
1
omit conversion to mass action for stoichiometries > 100 to avoid StackOverflow in simplify_fractions
#161
paulflang
closed
2 months ago
0
Error constructing reaction system from SBML BioModel
#160
jchitpin
closed
2 months ago
2
Add citation.cff
#159
paulflang
closed
2 months ago
0
Bump to SymbolicUtils v2
#158
ChrisRackauckas
closed
1 month ago
2
CompatHelper: add new compat entry for SBMLToolkit at version 0.1 for package docs, (keep existing compat)
#157
github-actions[bot]
opened
3 months ago
0
CompatHelper: bump compat for SymbolicUtils to 2, (keep existing compat)
#156
github-actions[bot]
closed
1 month ago
0
Bump actions/checkout from 3 to 4
#155
dependabot[bot]
closed
3 months ago
0
Add citation file
#154
paulflang
closed
3 months ago
1
Bump julia-actions/setup-julia from 1 to 2
#153
dependabot[bot]
closed
5 months ago
0
up MTK
#152
paulflang
closed
6 months ago
2
[skip ci] update downgrade CI repo
#151
ArnoStrouwen
closed
6 months ago
0
ci: explicitly specify token for codecov
#150
thazhemadam
closed
7 months ago
0
[skip ci] Update dependabot.yml
#149
ArnoStrouwen
closed
7 months ago
0
Bump crate-ci/typos from 1.17.0 to 1.18.0
#148
dependabot[bot]
closed
7 months ago
1
Bump codecov/codecov-action from 3 to 4
#147
dependabot[bot]
closed
7 months ago
0
SBMLToolkit and Catalyst Warnings
#146
NikosMemmos
closed
7 months ago
4
Bump actions/cache from 3 to 4
#145
dependabot[bot]
closed
7 months ago
0
More CI
#144
ArnoStrouwen
opened
8 months ago
1
Bump crate-ci/typos from 1.16.23 to 1.17.0
#143
dependabot[bot]
closed
8 months ago
1
Downgrade CI
#142
ArnoStrouwen
closed
8 months ago
0
Test master
#141
ChrisRackauckas
closed
8 months ago
2
Bump actions/checkout from 3 to 4
#140
dependabot[bot]
closed
8 months ago
0
Bump actions/upload-artifact from 3 to 4
#139
dependabot[bot]
closed
9 months ago
1
typos + Aqua CI
#138
ArnoStrouwen
closed
8 months ago
7
Update README.md
#137
paulflang
closed
9 months ago
1
Improve docstrings
#136
ArnoStrouwen
opened
11 months ago
2
Documenter 1.0 upgrade
#135
ArnoStrouwen
closed
11 months ago
1
SBML export capability?
#134
seyedaha
opened
12 months ago
1
Bump actions/checkout from 3 to 4
#133
dependabot[bot]
closed
1 year ago
0
Support initialAssignments with the DefaultImporter
#132
paulflang
closed
1 year ago
1
support kinetic laws with only cn elements
#131
paulflang
opened
1 year ago
1
return correct variable type/metadata in map_symbolics_ident
#130
paulflang
closed
1 year ago
1
mark test as broken
#129
paulflang
opened
1 year ago
1
format
#128
paulflang
closed
1 year ago
0
fix handling g of duplicate speciesReference
#127
paulflang
closed
1 year ago
3
Bump actions/upload-artifact from 1 to 3
#126
dependabot[bot]
closed
1 year ago
1
Create draft-pdf.yml
#125
paulflang
closed
1 year ago
0
add joss paper
#124
paulflang
closed
1 year ago
5
handle params with initialAssignment
#123
paulflang
closed
1 year ago
3
Bump codecov/codecov-action from 1 to 3
#122
dependabot[bot]
closed
1 year ago
0
Bump actions/cache from 1 to 3
#121
dependabot[bot]
closed
1 year ago
0
Bump actions/checkout from 1 to 3
#120
dependabot[bot]
closed
1 year ago
0
enable dependabot for GitHub actions
#119
ranocha
closed
1 year ago
0
Failing CI for v0.1.21
#118
paulflang
closed
7 months ago
0
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