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SciML
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SBMLToolkit.jl
SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit
https://docs.sciml.ai/SBMLToolkit/stable/
MIT License
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Fix formatting
#117
SebastianM-C
closed
1 year ago
1
update docs
#116
paulflang
closed
1 year ago
2
Pl/simplify api
#115
paulflang
closed
1 year ago
1
Pl/rescue20230303
#114
paulflang
closed
1 year ago
1
Pl/catalystupdate
#113
paulflang
closed
1 year ago
3
Pl/catalistv0.13
#112
paulflang
closed
1 year ago
0
support Catalyst v13
#111
paulflang
closed
1 year ago
4
CompatHelper: bump compat for Catalyst to 13, (keep existing compat)
#110
github-actions[bot]
closed
1 year ago
1
various doc and style improvements
#109
ArnoStrouwen
closed
1 year ago
1
disable converting nonconstant parameters to states
#108
anandijain
closed
1 year ago
2
use SBML converter that retains initialAssignment
#107
paulflang
closed
1 year ago
1
Symbolic formulas for initial conditions being dropped
#106
isaacsas
opened
1 year ago
0
basic nameswapping utility for SimBiology
#105
anandijain
opened
1 year ago
2
CompatHelper: bump compat for SymbolicUtils to 1, (keep existing compat)
#104
github-actions[bot]
closed
1 year ago
4
CompatHelper: bump compat for SymbolicUtils to 0.20, (keep existing compat)
#103
github-actions[bot]
closed
1 year ago
2
lower each compartment to it's own reactionsystem
#102
anandijain
opened
1 year ago
1
Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger.
#101
NikosMemmos
closed
1 year ago
10
Only warn for events if model has events
#100
xlxs4
closed
1 year ago
5
Fix broken libSBML link in docs
#99
xlxs4
closed
1 year ago
1
support kwargs[:defaults] in the ReactionSystem constructor
#98
paulflang
closed
1 year ago
5
[skip ci] doc compat
#97
ArnoStrouwen
closed
1 year ago
1
ERROR: "Incremental compilation may be fatally broken for this module" error
#96
NikosMemmos
closed
1 year ago
1
spelling
#95
ArnoStrouwen
closed
1 year ago
0
reproducible docs
#94
ArnoStrouwen
closed
1 year ago
0
test/reactionsystem.jl
#93
ArnoStrouwen
closed
1 year ago
1
add logo
#92
ArnoStrouwen
closed
1 year ago
1
why are we warning about events regardless of if the model has events?
#91
anandijain
closed
1 year ago
3
canonize docs
#90
ArnoStrouwen
closed
1 year ago
1
Pl/test suite fixes
#89
paulflang
closed
1 year ago
8
Create Documentation.yml
#88
ChrisRackauckas
closed
1 year ago
1
Pl/scimldocs
#87
paulflang
closed
1 year ago
1
Update README.md
#86
anandijain
closed
2 years ago
1
MassInstallAction: Install the Invalidations workflow on this repository
#85
devmotion
closed
2 years ago
0
CompatHelper: bump compat for SBML to 1, (keep existing compat)
#84
github-actions[bot]
closed
1 year ago
1
split into files
#83
paulflang
closed
2 years ago
2
add events to reactionsystem by wrapping them in a constraintsystem
#82
paulflang
closed
2 years ago
1
Create SbmlTestSuite.yml
#81
paulflang
closed
2 years ago
2
add workflow to run SBMLToolkitTestSuite on tagbot
#80
paulflang
closed
2 years ago
2
Pl/use safetests
#79
paulflang
closed
2 years ago
3
setup SciML Style
#78
ChrisRackauckas
closed
2 years ago
2
Pl/fix assignment rule
#77
paulflang
closed
2 years ago
4
fallback to zero reverse rate
#76
paulflang
closed
2 years ago
3
Pl/run test suite
#75
paulflang
opened
2 years ago
0
CompatHelper: bump compat for Catalyst to 12, (keep existing compat)
#74
github-actions[bot]
closed
1 year ago
0
CompatHelper: bump compat for Catalyst to 12, (keep existing compat)
#73
github-actions[bot]
closed
2 years ago
0
Pl/constant specs as ps
#72
paulflang
closed
2 years ago
6
Pl refactor v0.1.13
#71
paulflang
closed
2 years ago
7
CompatHelper: bump compat for Catalyst to 11, (keep existing compat)
#70
github-actions[bot]
closed
2 years ago
1
Support new SBML.jl for volume corrections and new Catalyst.jl for metadata
#69
paulflang
closed
2 years ago
2
Identify mass action rate laws in reactions with reactant stoichiometry of 2 or higher in models with stochastic description
#68
paulflang
opened
2 years ago
1
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