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Sendrowski / fastDFE

Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.
https://fastdfe.readthedocs.io
GNU General Public License v3.0
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ancestral-allele-annotation distribution-of-fitness-effects site-degeneracy-annotation site-frequency-spectrum-parsing

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fastDFE

codecov Documentation Status PyPI version License: GPL v3 Downloads DOI

fastdfe is a package for fast, flexible, and hierarchical inference of the distribution of fitness effects (DFE) from site frequency spectra (SFS). It also contains a versatile VCF-to-SFS parser with support for ancestral allele and site-degeneracy annotation.

Please see the documentation for all the details.