Sentieon-scripts

Helper scripts for biological data processing from Sentieon

Available scripts

• Example Pipelines - Example Sentieon pipelines implemented in shell script.
• Memest - Memory usage estimation for Sentieon variant callers from a BAM header and index (.bai) files.
• MNP - Merge neighboring variants along the same haplotype from Sentieon somatic variant callers into multi-nucleotide polymorphisms (MNPs).
• TNscope Filter - TNscope filter implemented in python script.

License

Unless otherwise indicated, files in this repository are licensed under a BSD 2-Clause License.