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Shunsuke-1994 / rfamgen

Code repository of "Deep generative design of RNA family sequences"
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Bio.Alphabet is deprecated #4

Open 3f6a opened 4 months ago

3f6a commented 4 months ago

https://github.com/Shunsuke-1994/rfamgen/blob/dad47656c3047bc845a352ba5315555aaf73fc7c/scripts/get_tidy_sequences_from_fasta_rfam.py#L5

It seems safe to simply remove all references to alphabet. E.g., alphabet = generic_rna can be removed everywhere.

Shunsuke-1994 commented 4 months ago

Thank you for your comments, again.

I want to update the script and some very slow scripts.

Best,

3f6a commented 4 months ago

Great, thank you.