To set up the environment variables to run on Savio, you need to modify the .bashrc or .bash_profile to include:
module load intel module load openmpi module load python/2.7.8 module load numpy module load scipy module load matplotlib module load setuptools module load tables module load nose module load mpi4py
export DATAPATH=/global/scratch/co_nuclear/MCNP/MCNP_DATA/
export PYTHONIOENCODING=utf-8
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/global/home/groups/co_nuclear/pyne/lib
PATH=$PATH:/global/home/users/sbogetic/bin:/global/home/groups/co_nuclear/bin
PATH=$PATH:/global/home/users/sbogetic/bin:/global/home/groups/co_nuclear/LANL/MCNP5/bin/
PATH=$PATH:$HOME/bin:/global/home/groups/co_nuclear/bin:/global/home/groups/co_nuclear/ADVANTG/bin
PYTHONPATH=$PYTHONPATH:/global/home/groups/co_nuclear/python-pkgs/pp-1.6.5
PYTHONPATH=$PYTHONPATH:/global/home/groups/co_nuclear/python-pkgs/pyDOE-0.3.8-py2.7.egg
export PATH
alias groupdir="cd /global/home/groups/co_nuclear" alias nuc='squeue -q nuclear_normal'
To get the latest repo on Savio: You will need to generate an SSH key. Follow the steps here:
https://help.github.com/articles/connecting-to-github-with-ssh/
Then clone the repo in your desired folder location.
\license GNU GPLv3.0+
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.