Update docs, dirs and templates

[Sllambias]

Major Changes:

• [x] Move modules into actual Modules folder to conform with Paper structure. This might impact imports when Yucca version is updated to > 1.1.15
• [x] Added BaseLightningModule that can be used for basic experiments with the YuccaLightningModule building ontop of this to add the extra functionality and QoL functions that the pipeline wants to use.
• [x] Added functionality to enable inference on previously preprocessed data (see the predict_without_preprocessing method of the BaseLightningModule)
• [ ] Added functional templates for the full pipeline
• [x] Added additional tests

Update:

• [x] ReadMe
• [x] Changing Params
• [ ] Run Scripts Advanced

Check Links:

• [ ] ReadMe
• [ ] Changing Params
• [ ] Run Scripts Advanced

[Sllambias]

add option to use direct path to plan in preprocessing

""" preprocessor = preprocessor_class(path_to_plan) preprocessor.to_the_moon() """