Snitkin-Lab-Umich prewas issues - Githubissues

Snitkin-Lab-Umich / prewas

R package to perform data pre-processing for more informative bacterial GWAS

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Futureapplyfix

#15 alipirani88 closed 1 year ago
0
Could you tell me that how could covent gene sequencing file to VCF file?

#14 Albertzhuo123 opened 2 years ago
0
NOTICE: plan(multiprocess) of future is deprecated

#13 HenrikBengtsson opened 3 years ago
6
Clarify in vignette how to parallelize `prewas`

#12 zenalapp opened 3 years ago
0
Poor example tree

#11 katiesaund opened 3 years ago
0
Error: Failed to retrieve the result of MulticoreFuture (future_apply-6)

#10 hsinjou0714 opened 3 years ago
2
prewas specifying reference genome

#9 hsinjou0714 closed 3 years ago
1
Prewas unable to install in R

#8 hsinjou0714 closed 3 years ago
3
Object must be a character string.

#7 Owuorgpo closed 4 years ago
2
Group minor alleles only if they occur at less than a certain frequency in the dataset

#6 zenalapp opened 4 years ago
0
Return new altnernative allele after re-referencing in addition to snpeff impact

#5 sthiede opened 4 years ago
0
Add SnpEeff annotation to binary variant matrix

#4 zenalapp opened 4 years ago
0
replace_non_ATGC_with_N for indels

#3 katiesaund closed 4 years ago
1
Add option to filter SNPs by SnpEff predicted impact

#2 zenalapp closed 4 years ago
1
Add vignette

#1 zenalapp closed 4 years ago
1