GAMO_public

Genetic Algorithm for Metabolic Optimization

AUTHOR
Tobias Alter
Institute of Applied Microbiology, RWTH Aachen University
tobias.alter@rwth-aachen.de

INSTALLATION
Copy or clone files and folders to your hard drive. Matlab 2016 (or higher) (https://de.mathworks.com/products/matlab.html), Gurobi Solver 7 (or higher) (www.gurobi.com/), and the COBRA toolbox (https://opencobra.github.io/cobratoolbox/stable/) are needed. For an extended example of how to set up the model, necessary options, and parameters refer to the GAMO_Example.m script.
The following Matlab toolboxes need to be installed to ensure full functionality of GAMO:

• Parallel Computing Toolbox
  
• Communication Toolbox
  
• Matlab Coder (and associated toolboxes)
  

RELATED PUBLICATION
Genetic Optimization Algorithm for Metabolic Engineering Revisited
Alter, T. B.; Blank, L. M.; Ebert, B. E.
Metabolites 2018, 8(2), 33
DOI: 10.3390/metabo8020033

The content of this repository is licensed under a MIT License.