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A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments.
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ProbeInterface aims to provide a common framework to handle probe information across neuroscience experiments.
ProbeInterface is used by the SpikeInterface package to attach probe information to a recording object. You can find detailed documentation in the SpikeInterface documentation.
In practice, ProbeInterface is a lightweight package to handle:
In addition, ProbeInterface also offers the following features:
matplotlib
-based plotting functionsDetailed documentation of the latest PyPI release of ProbeInterface can be found here.
Detailed documentation of the development version of ProbeInterface can be found here.
You can install the latest version of probeinterface
version with pip:
pip install probeinterface
To get the latest updates, you can install probeinterface
from source:
git clone https://github.com/SpikeInterface/probeinterface.git
cd probeinterface
pip install -e .
cd ..
If you find ProbeInterface useful in your research, please cite:
@article{garcia2022probeinterface,
title={ProbeInterface: a unified framework for probe handling in extracellular electrophysiology},
author={Garcia, Samuel and Sprenger, Julia and Holtzman, Tahl and Buccino, Alessio P},
journal={Frontiers in Neuroinformatics},
volume={16},
pages={823056},
year={2022},
publisher={Frontiers Media SA}
}