Closed cahuparo closed 2 years ago
Hi @cahuparo.
Sorry about the delay. I only saw the notification today.
It seems like STRUCTURE is trying to use location data.
Can you please post the text Structure_threader outputs before the error?
Specifically I'm interested in the lines that contain each STRUCTURE command, since your mainparams
file seems to be just fine.
It's been almost 2 and a half years. Closing due to inactivity.
Hi!
I am trying to run STRUCTURE from the command line using Structure-threader. This is the error that I am getting:
This is a few data lines from the input file:
This is my mainparams file:
This is the command I use to run:
structure_threader run -K 10 -R 3 -i /gpfs_common/share03/lmquesad/chparada/structure/input_file_NOvarroa.txt -o /gpfs_common/share03/lmquesad/chparada/structure/ -t 16 -st /usr/local/usrapps/lmquesad/env_structure_threader/bin/structure
Any suggestion would be appreciated.
Thanks!!!
Camilo