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StuntsPT / Structure_threader

A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".
GNU General Public License v3.0
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clustering doi genetics parallelize pypi python science structure structure-threader wrapper

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Structure_threader

A program to parallelize the runs of Structure, fastStructure, MavericK and ALStructure software.

Travis Status Documentation Status DOI Codacy Badge Pipeline Status

Installation

pip3 install structure_threader

Structure_threader is available on Pypi. It can be installed by simply running the above command. If you are on a *nix like platform, you can use the --user option if you can't or don't want to install the program as root user. Binaries for STRUCTURE, fastStructure and MavericK are also distributed for GNU/Linux and Mac OS X. For more details, please check the manual.

Manual

The complete documentation can be found on readthedocs.org.

Citation

If you use Structure_threader, please cite our Zenodo DOI. Molecular Ecology Resources paper

Full citation:

Pina-Martins, F., Silva, D. N., Fino, J., & Paulo, O. S. (2017). Structure_threader: An improved method for automation and parallelization of programs structure, fastStructure and MavericK on multicore CPU systems. Molecular Ecology Resources, n/a-n/a. doi:10.1111/1755-0998.12702

License

GPLv3