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SuLab / GeneWikiCentral

GeneWiki Organization
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create items for curators and evidence codes, update geneprotein #109

Closed andrewsu closed 5 years ago

andrewsu commented 5 years ago

scanning the console output from the GOProtein_Bot job currently running (http://jenkins.sulab.org/job/GOProtein_Bot/62/consoleFull) we clearly need to create WD items for a few curators (eg synGO, YuBioLab, ARUK-UCL) and at least one evidence code (HDA). Mappings should be added to https://github.com/SuLab/scheduled-bots/blob/master/scheduled_bots/geneprotein/__init__.py.

andrawaag commented 5 years ago

I added the mappings for the missing curators:

'PseudoCAP': 'Q60526133', 'ARUK-UCL': 'Q60526173', 'GOC-OWL': 'Q60527201', 'SynGO': 'Q60527231', 'SynGO-UCL': 'Q60527231', 'YuBioLab':'Q60527361', 'JCVI': 'Q1439786', 'Mengo': 'Q60527548', 'PAMGO_GAT': 'Q60527768', 'RGD': 'Q7295410', 'Roslin_Institute': 'Q1633976', 'TIGR': 'Q1439786'

The pairs "SynGO and SynGO-UCL" and "JCVI and TIGR" point to identical Wikidata id's. This is because these items were merged in the source.

Also the following evidence codes were added 'HDA': 'Q60521899', 'HEP': 'Q60521293'

andrewsu commented 5 years ago

addressed in https://github.com/SuLab/scheduled-bots/commit/5cff12d4240f6108fbc0ed5116f746e31e391c18