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SuLab / GeneWikiCentral

GeneWiki Organization
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Load ClinGen gene-disease validity data #116

Closed andrewsu closed 5 years ago

andrewsu commented 5 years ago

https://search.clinicalgenome.org/kb/gene-validity/

Curated / semi-curated source of gene-disease links, currently with 747 entries

Evidence category Count
Definitive 356
Limited 139
No Reported Evidence 81
Moderate 73
Disputed 69
Strong 22
Refuted 7
-- --
Grand Total 747

seems like the latest data is always available at https://search.clinicalgenome.org/kb/gene-validity.csv; I see no evidence that an API is available or planned.

andrewsu commented 5 years ago

explicitly CC0 licensed! https://clinicalgenome.org/docs/terms-of-use/

andrewsu commented 5 years ago

also use this as an excuse to update documentation with WDI and at http://learningwikibase.com/data-import/. Coordinate with @andrawaag...

sabahzero commented 5 years ago

https://github.com/sabahzero/WikiData-ClinGenBot

sabahzero commented 5 years ago

@andrewsu @andrawaag following up to check/confirm if this is now closed?

sabahzero commented 5 years ago

https://github.com/SuLab/scheduled-bots/tree/master/scheduled_bots/clingen