load gene-disease associations from Harmonizome - Githubissues

SuLab / GeneWikiCentral

GeneWiki Organization

MIT License

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load gene-disease associations from Harmonizome #77

Open andrewsu opened 6 years ago

andrewsu commented 6 years ago

Harmonizome has precomputed 139800 gene-disease perturbation associations based on GEO. Would be very useful to load to Wikidata.

Files can be downloaded:

Or accessed by API:

Example API call to query by gene symbol (retrieving data sets in which it is differentially expressed): http://amp.pharm.mssm.edu/Harmonizome/api/1.0/gene/nanog?showAssociations=true
Example API call to query by data set (retrieving all genes that are differentially expressed): http://amp.pharm.mssm.edu/Harmonizome/api/1.0/gene_set/V/Allen+Brain+Atlas+Adult+Human+Brain+Tissue+Gene+Expression+Profiles