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SuLab / WikiGenomesBase

A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
https://chlambase.org/
MIT License
7 stars 4 forks source link

Add BLAST tool #157

Closed khybiske closed 6 years ago

khybiske commented 6 years ago

Suggested by Scott, and a good idea. In the Gene Product module, next to Download, make a column/button to send the user to NCBI BLAST(protein). Should be easy, right?

djow2019 commented 6 years ago

Just a link to blastp? Sure

djow2019 commented 6 years ago

Think its done image.png

khybiske commented 6 years ago

That's great. Just to explore the idea... do you think there's a way to link directly to a prefilled blastp query? Maybe that's not possible. Alternatively, copy AA sequence to clipboard and go to blastp: https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome

djow2019 commented 6 years ago

Those are both good ideas. I'll see if I can get the first one before I do the second one...

djow2019 commented 6 years ago

Updated with the former. live now

khybiske commented 6 years ago

All done, right?