Genomic data portal to Wikidata.org built specifically for the chlamydial research community
ChlamBase.org, a fork of WikiGenomes.org, is an open source and user-curated database of functional annotations for 3 model Chlamydia species: C. trachomatis 434/BU ( LGV L2 ), C. trachomatis D/UW-3/CX, and C. muridarum Nigg. A primary goal of this portal is to provide a powerful user-oriented experience tailored to the research interests of the Chlamydia research community, and to the unique biology of Chlamydia.
A central feature of ChlamBase is to allow users to view, add, and edit: evidence-based gene annotations engineered mutant strains orthologous gene comparisons developmental gene expression *host interaction targets
Instructions to create a model organism database for the microbes of your choice, go to the wikigenomes_base repository and follow the build instructions.
When cloning repo for first time:
pip install -r requirements.txt
Manually do pip install celery==4.0.0 afterwards (because it doesn't install properly in the requirements.txt file)
Copy secret_settings template and fill accordingly
Run server with python manage.py runserver
Need to install grunt in order to rebuild code
Install NPM
npm install grunt-cli -g
From chlambase directory, npm install
Then, do "grunt minify" to minify and rebuild classes
Also need to run ./setup in the JBROWSE directory
(Does not work on windows)
Need celery task manager: celery -A tasks worker --loglevel=info