A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
Separated wikigenomes_conf into two files: secret settings and application settings
Refactored jbrowse_configuration file, fixed srp violations and updated gff converters; direct integration into jbrowse
fixed queries in WD_Utils
fixed start/end malformed mutant data which has numbers with commas
refactored setup.py
refactored tasks.py and fixed
reran on ChlamBase, which added the plasmid back to C. Muridarum Nigg (finally showing both!)
--> Automatic JBrowse Data Setup by list of TaxIDs :)
Integrated Celery Task Manager to update annotations to JBrowse
Fixed broker url
Ran worker thread on dev server with "celery -A wikigenomes worker -l info"
Added tasks for update mutants and update operons which are called after new annotations are added to their respective forms
--> New Mutant Data/ Operon Data automatically updated in JBrowse
Fixed all of the setup scripts
Integrated Celery Task Manager to update annotations to JBrowse