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SuLab / WikiGenomesBase

A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
https://chlambase.org/
MIT License
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Localization Visualization module #7

Closed putmantime closed 6 years ago

putmantime commented 7 years ago

-graphical visualization of the subcellular localization based on the cellular component go annotation

khybiske commented 7 years ago

Something like this? (for an inclusion membrane protein) Lacking detail, but just to illustrate the basic idea... chlambase schematic

andrewsu commented 6 years ago

Examples of interactive localization widgets:

khybiske commented 6 years ago

@andrewsu Have you seen this one?

http://www.proteinatlas.org/ENSG00000148396-SEC16A/cell

Effective and appropriate, however Tim says we cannot swipe their code. Ultimately, I think if we just make a series of graphics for all of the organelles/locations we could have (tailored to chlamydia infected cells), then the annotation can just trigger a particular one to display. Not hard. I can do images.

andrewsu commented 6 years ago

great, I knew I was missing one (at least). Ideally it would be something more clever than static images -- creating all combinations of expression patterns would be cumbersome. Anyway, I see this as a nice-to-have, so tagging this as "help wanted" in case we get a enterprising student or intern that needs a project...