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Sum02dean
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MLG
Machine Learning in Genomics Course ETH
MIT License
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64 histone rnn
#65
LiineKasak
closed
2 years ago
0
histone rnn
#64
LiineKasak
closed
2 years ago
0
bayesian
#63
Sum02dean
opened
2 years ago
1
xgboost
#62
Sum02dean
opened
2 years ago
0
submission for RF
#61
LiineKasak
opened
2 years ago
1
55 bin value types
#60
LiineKasak
closed
2 years ago
0
#58 add sequence data loading
#59
LiineKasak
closed
2 years ago
0
use seq in dataloader
#58
LiineKasak
closed
2 years ago
0
lstm
#57
Sum02dean
opened
2 years ago
0
55 bin value types
#56
LiineKasak
closed
2 years ago
1
bin value types
#55
LiineKasak
closed
2 years ago
0
#47 save different histone mark dataset with different names
#54
LiineKasak
closed
2 years ago
0
optimize-window
#53
Sum02dean
closed
2 years ago
0
35 svm baseline
#52
Sum02dean
closed
2 years ago
0
35 svm baseline
#51
Sum02dean
closed
2 years ago
0
34 rf baseline
#50
Sum02dean
closed
2 years ago
0
41 deep histone cnn
#49
TaoDFang
closed
2 years ago
2
34 rf baseline
#48
Sum02dean
closed
2 years ago
1
custom histone list
#47
LiineKasak
closed
2 years ago
0
21 check distribution of gevs
#46
Sum02dean
closed
2 years ago
0
36 data loader for pytorch
#45
Sum02dean
closed
2 years ago
0
28 create gct files
#44
TaoDFang
closed
2 years ago
0
36 data loader for pytorch
#43
LiineKasak
closed
2 years ago
0
data_loaded.py- load training and validation dataset separately ?
#42
TaoDFang
closed
2 years ago
1
DeepHistone CNN model
#41
TaoDFang
opened
2 years ago
4
Determine window size
#40
Sum02dean
opened
2 years ago
0
#37 add boolean for reverse strand sequence loading
#39
LiineKasak
closed
2 years ago
0
30 load bw data
#38
LiineKasak
closed
2 years ago
1
reverse strand seq loading
#37
LiineKasak
closed
2 years ago
0
data loader for pytorch
#36
LiineKasak
closed
2 years ago
0
svm baseline
#35
Sum02dean
closed
2 years ago
0
rf baseline
#34
Sum02dean
closed
2 years ago
0
Allow user to specify directoy
#33
Sum02dean
closed
2 years ago
5
Conda environment installation via .yml failed
#32
TaoDFang
opened
2 years ago
2
Implement sliding window over gene
#31
Sum02dean
opened
2 years ago
0
Load bed & bw data
#30
LiineKasak
closed
2 years ago
0
#23 add reference genome parsing, downgrade python for pyfasta, fix typo
#29
LiineKasak
closed
2 years ago
2
Create gct files to visualise expresion data in IGV brower
#28
TaoDFang
closed
2 years ago
0
21 check distribution of gevs
#27
LiineKasak
closed
2 years ago
6
Revert "Dean branch"
#26
LiineKasak
closed
2 years ago
0
Dean branch
#25
Sum02dean
closed
2 years ago
0
Check feature distributions
#24
Sum02dean
opened
2 years ago
0
Load seq data
#23
LiineKasak
closed
2 years ago
0
Loading data by chromosomes
#22
LiineKasak
closed
2 years ago
5
Check distribution of GEVs
#21
Sum02dean
closed
2 years ago
0
Merge pull request #19 from Sum02dean/main
#20
Sum02dean
closed
2 years ago
0
Updating my branch with task_1 addition
#19
Sum02dean
closed
2 years ago
0
Normalize data for H3K9me3
#18
LiineKasak
opened
2 years ago
0
Basic code for task 1
#17
LiineKasak
closed
2 years ago
2
Explore the data - basic EDA
#16
Sum02dean
opened
2 years ago
6
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