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Sydney-Informatics-Hub
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Scalable-DIA-NN
Scalable workflow to run https://github.com/vdemichev/DiaNN on NCI Gadi HPC
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Add dos2unix conversion for output files generated under Wine
#38
calizilla
opened
4 months ago
0
Separate docs from readme
#37
calizilla
closed
5 months ago
0
move dropdown details from README to own docs
#36
calizilla
closed
5 months ago
0
new data links
#35
calizilla
closed
6 months ago
0
Merge setup fixes to main
#34
calizilla
closed
6 months ago
0
Small tweaks when testing the latest library flex and params file changes
#33
calizilla
closed
6 months ago
0
step 2 checker script is misleading after rerunning failed
#32
calizilla
opened
6 months ago
0
Enable use of pre-existing insilico lib for library free
#31
calizilla
opened
6 months ago
0
Add results comparison library-free vs library-based
#30
calizilla
closed
5 months ago
1
Delete dot_wine.tar.README.md
#29
calizilla
closed
6 months ago
0
Library dev completed
#28
calizilla
closed
6 months ago
0
merge cali-dev to main
#27
calizilla
closed
6 months ago
0
Avoid link exists errors when re-running setup script
#26
calizilla
closed
6 months ago
1
Add file checks for all inputs
#25
calizilla
opened
9 months ago
0
Merge cali-dev into main
#24
calizilla
closed
10 months ago
1
Test with Wine 8
#23
calizilla
opened
10 months ago
0
Reincorporate mzML support
#22
calizilla
opened
10 months ago
0
Test on .dia format
#21
calizilla
opened
10 months ago
0
Test on Thermo .raw format
#20
calizilla
opened
10 months ago
0
Test on Bruker .d format
#19
calizilla
opened
10 months ago
0
Checker script erroneous if inputs empty
#18
calizilla
closed
10 months ago
0
Step 2 checker script prints the wrong inputs filename to STDOUT
#17
calizilla
closed
10 months ago
0
Move Raw_data to Inputs directory
#16
calizilla
opened
11 months ago
0
Add cohort size to subsample script
#15
calizilla
opened
11 months ago
0
Add some resource and batch results to the README
#14
calizilla
closed
5 months ago
1
Add a script to report genes detected from quantification steps
#13
calizilla
opened
11 months ago
0
Add to the README a note about 'ln: file exists' error when running setup
#12
calizilla
opened
11 months ago
1
Remove the arrow prompts on setup script
#11
calizilla
closed
10 months ago
0
Split setup script into params yaml plus script
#10
calizilla
closed
6 months ago
1
Add link to pwiz.sif setup instructions to user guide
#9
calizilla
closed
6 months ago
1
Wine container that doesn't require custom local build for every user
#8
calizilla
closed
6 months ago
1
Convert the workflow to Nextflow
#7
calizilla
opened
11 months ago
0
Make dot_wine.tar accessible to all users
#6
calizilla
closed
6 months ago
1
Add step 1 in silico digest
#5
calizilla
closed
6 months ago
1
Update original workflow with Wine version
#4
calizilla
closed
10 months ago
1
Dev
#3
tracychew
closed
1 year ago
0
fix typos
#2
tracychew
closed
1 year ago
0
dev
#1
tracychew
closed
1 year ago
0