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Sydney-Informatics-Hub
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Somatic-shortV-nf
A nextflow workflow for calling Somatic short Variant using gatk
GNU General Public License v3.0
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Re-arranged the results into specific sub-dir and updated README.md #12
#15
nandan75
closed
7 months ago
1
Ref indexes apply dry issues7and8
#14
nandan75
closed
7 months ago
2
Provide Gadi run script with resources
#13
georgiesamaha
opened
8 months ago
0
Explain results output
#12
georgiesamaha
closed
7 months ago
2
Add an optional module for creating Panel of Normals
#11
nandan75
opened
8 months ago
1
Autogen intervals issue5
#10
nandan75
closed
8 months ago
2
Revise GATK best practices re: requirements for this pipeline
#9
georgiesamaha
closed
8 months ago
1
DRY out configurations
#8
georgiesamaha
closed
7 months ago
1
Clarify reference indexes needed
#7
georgiesamaha
closed
8 months ago
1
Variant annotation with snpEff
#6
georgiesamaha
opened
8 months ago
0
Autogenerate specified number of intervals
#5
georgiesamaha
closed
8 months ago
0
Benchmark with human T/N samples
#4
georgiesamaha
opened
8 months ago
2
Port code to DSL2 template
#2
nandan75
closed
8 months ago
10
Productionize nandan
#1
nandan75
closed
8 months ago
0