Sydney-Informatics-Hub rnaseqOct23_Testing issues

Sydney-Informatics-Hub / rnaseqOct23_Testing

This document is for addressing issues encountered when preparing for the Oct23 nf-core/rnaseq workshop

0 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

After workshop cleanup tasks - nandan

#52 nandan75 opened 11 months ago
1
Day 2 nandan's revisions

#51 nandan75 closed 11 months ago
1
Replace IGV exercise for alignment visualisation

#50 nandan75 closed 11 months ago
4
Create a wrapup page for Day2

#49 nandan75 closed 11 months ago
1
Update day 2 materials

#48 nandan75 closed 2 months ago
1
Create multiple instances from a final image

#47 nandan75 closed 11 months ago
10
Create workflow diagram to be included in training materials

#46 georgiesamaha closed 11 months ago
0
Upload DE RStudio container image to CVMFS

#45 nandan75 closed 11 months ago
2
Check with Pawsey - Increase the number of loop devices as above before cloning the instances

#44 nandan75 closed 11 months ago
2
Session 2.3 exploratory analysis materials

#43 georgiesamaha closed 11 months ago
0
Update day 2 materials

#42 georgiesamaha closed 11 months ago
2
Session 2.5 Functional enrich materials

#41 georgiesamaha closed 11 months ago
0
Session 2.4 DE gene materials

#40 georgiesamaha closed 11 months ago
0
Session 2.2 rstudio set up materials

#39 georgiesamaha closed 11 months ago
0
Session 2.1 recap materials

#38 georgiesamaha closed 11 months ago
0
Update samplesheet strand

#37 georgiesamaha closed 11 months ago
1
Update samplesheet to avoid strandedness error

#36 georgiesamaha closed 11 months ago
0
INSTRUCTIONS FOR USING GITHUB PROJECT BOARD

#35 georgiesamaha closed 10 months ago
0
Tidy up all exercises, add new plots

#34 georgiesamaha closed 11 months ago
0
Set up instructions

#33 georgiesamaha closed 11 months ago
0
Add set up page from custom nf-core

#32 georgiesamaha closed 11 months ago
0
Add intro materials for #8

#31 georgiesamaha closed 11 months ago
1
Draft materials for session 1.6 reports

#30 georgiesamaha closed 11 months ago
0
Draft materials for session 1.5

#29 georgiesamaha closed 11 months ago
0
Session 1.6 workflow performance sesison

#28 georgiesamaha closed 11 months ago
0
Session 1.5 align and quant session

#27 georgiesamaha closed 11 months ago
0
Draft materials for session 1.4

#26 georgiesamaha closed 11 months ago
1
Session 1.4 full workflow run materials

#25 georgiesamaha closed 11 months ago
0
Draft session 1.3 qc and trimming materials

#24 georgiesamaha closed 11 months ago
0
Session 1.3 qc run materials

#23 georgiesamaha closed 11 months ago
0
Draft session 1.2 intro to nfcore materials

#22 georgiesamaha closed 11 months ago
0
Session 1.2 nf workflow materials

#21 georgiesamaha closed 11 months ago
2
Draft case study session materials

#20 georgiesamaha closed 11 months ago
1
Session 1.1 case sudy materials

#19 georgiesamaha closed 11 months ago
1
Case study diagram attempt 1

#18 georgiesamaha closed 11 months ago
2
Create case study diagram

#17 georgiesamaha closed 11 months ago
1
Resolve Nimbus loop issue

#16 nandan75 closed 11 months ago
4
Test running RStudio on Nimbus VMs

#15 georgiesamaha closed 11 months ago
2
Upload necessary files to CVMFS

#14 georgiesamaha closed 11 months ago
12
Created Runtime-testing doc and add other files

#13 nandan75 closed 11 months ago
1
Plan for adjustment of day 1 materials

#12 georgiesamaha closed 11 months ago
0
Test nf-core runtimes

#11 georgiesamaha closed 11 months ago
1
Update and publish DE R notebook

#10 georgiesamaha closed 11 months ago
4
Day 2 materials revision

#9 georgiesamaha closed 11 months ago
0
Day 1 materials introduction

#8 georgiesamaha closed 11 months ago
0
Day 2: test use of cvmfs with Rstudio image

#7 georgiesamaha closed 11 months ago
2
Test and track timing of nf-core workflow execution

#6 georgiesamaha closed 11 months ago
0
Day 1 materials revision

#5 georgiesamaha closed 11 months ago
0
Add env and vm set up

#4 georgiesamaha closed 12 months ago
1
Instructions for test VM set up

#3 georgiesamaha closed 12 months ago
0