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SydneyBioX
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BIDCell
Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
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Training Step ValueError
#17
meaksu
opened
2 weeks ago
7
Connecting BIDCell matrix and cell masks
#16
pakiessling
closed
2 weeks ago
1
Error in cv2.resize when using CellPos nuclei segmentation
#15
yuerua
closed
2 weeks ago
2
Using BidCell output in Xenium Ranger
#14
lhoranportelance
closed
2 months ago
0
IndexError in bidcell/processing/cell_gene_matrix.py
#13
diala-ar
opened
3 months ago
1
Question about nuclei segmentation
#12
chenyhvvvv
opened
3 months ago
3
how to draw cell boundaries from the output data
#11
shriyasmith
closed
3 months ago
3
semgenting_dapi using cellpose 'Nuclei' setting
#10
Ceyhun-Alar
closed
2 weeks ago
1
Preprocessing of single cell reference data
#9
Ceyhun-Alar
opened
4 months ago
3
Unable to generate transcripts.csv.gz and morphology_mip.ome.tif files.
#8
PhilCollinsChidi
closed
4 months ago
2
AssertionError
#7
ghost
closed
4 months ago
0
Cannot run example data on Windows system
#6
Lixinyoung
opened
5 months ago
0
Request for open all code especially for the reference data part
#5
aqlkzf
closed
8 months ago
1
Error saving model at the end of training epoch
#4
pakiessling
closed
8 months ago
4
Expected input[3, 499, 64, 64] to have 500 channels, but got 499 channels instead
#3
pakiessling
closed
9 months ago
1
Using GPU v CPU
#2
johnyaku
closed
9 months ago
3
Including Cell border stain information
#1
pakiessling
closed
4 months ago
2