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SysBioChalmers
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RAVEN
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
http://sysbiochalmers.github.io/RAVEN/
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KEGG subSystems field not as cell array
#552
Rachita-Kumar
opened
2 days ago
2
fix: getBlast, importModel, replaceMets, ravenCobraWrapper / feat: getIndexes
#551
edkerk
opened
1 week ago
1
doc: update README.md
#550
edkerk
closed
19 hours ago
1
non-matching identifiers when running getModelFromHomology
#549
glou123
opened
1 week ago
1
Is ftINIT compatible with other solvers than Gurobi?
#548
Yu-sysbio
opened
3 weeks ago
2
RAVEN 2.9.2
#547
edkerk
closed
1 month ago
1
fix: checkInstallation if MATLAB Add-On
#546
edkerk
closed
1 month ago
1
PredictLocalization issue
#545
DZQ339
opened
1 month ago
0
fix: setParam and removeMets bugs
#544
edkerk
closed
1 month ago
1
RAVEN 2.9.1
#543
edkerk
closed
1 month ago
1
fix: correct sign of sol.f field
#542
edkerk
closed
1 month ago
1
fix: parallelization
#541
edkerk
closed
1 month ago
1
doc: standardize function documentation
#540
edkerk
closed
1 month ago
1
fix: skip tests if solver is absent & glpk timeout
#539
edkerk
closed
1 month ago
3
RAVEN 2.9.0
#538
edkerk
closed
2 months ago
1
fix: cleanup some code
#537
edkerk
closed
2 months ago
1
fix: importModel if SBML contains missing SBO terms
#536
edkerk
closed
2 months ago
1
chore: update libSBML to 5.20.2
#535
edkerk
closed
2 months ago
2
fix: add "G_" prefix when exporting model to SBML
#534
simas232
closed
2 months ago
1
Error in getModelFromHomology function
#533
SANDRA-ui-rgp
closed
2 months ago
3
fix: various minor fixes
#530
edkerk
closed
2 months ago
2
bug: simplifyModel with irreversible backwards-only reactions
#529
edkerk
closed
2 months ago
0
fix: makeBinaryExecutable explicit filenames
#528
edkerk
closed
4 months ago
1
bug: make binaries executable on Ubuntu
#527
edkerk
closed
4 months ago
0
fix: extractMiriamallows multiple miriamNames
#525
edkerk
closed
4 months ago
1
RAVEN 2.8.7
#524
edkerk
closed
4 months ago
1
Unrecognized field name "compNames" with ravenCobraWrapper error
#523
edkerk
closed
4 months ago
0
fix: ravenCobraWrapper variations on cobra fields
#522
edkerk
closed
4 months ago
1
fix: swap soplex with scip as solver
#520
edkerk
closed
4 months ago
1
fix: ftINIT, importModel and default verbosity
#519
edkerk
closed
4 months ago
1
Can fast tINIT integrate data from bulk RNA-seq?
#518
yangjingyu1108
closed
4 months ago
8
SBO terms not exported properly to Excel format when they are within MIRIAM annotations
#516
pranasag
closed
2 months ago
5
RAVEN 2.8.6
#515
edkerk
closed
7 months ago
1
fix: solverTests for soplex
#514
edkerk
closed
8 months ago
1
bug: soplex reported failure, even when functional
#513
edkerk
closed
7 months ago
0
RAVEN 2.8.5
#512
edkerk
closed
8 months ago
1
feat: SoPlex binary for Windows
#511
edkerk
closed
8 months ago
1
refactor: getAllowedBounds to use progressbar
#510
ae-tafur
closed
8 months ago
0
bug: model loaded from YAML has no c-field
#509
edkerk
closed
8 months ago
0
fix: readYAMLmodel always make c-field
#508
edkerk
closed
8 months ago
1
RAVEN 2.8.4
#505
edkerk
closed
11 months ago
1
feat: getAllowedBounds optional runParallel-flag
#504
edkerk
closed
11 months ago
1
fix: checkModelStruct skip metSmiles
#503
edkerk
closed
11 months ago
1
fix: predictLocalization with DeepLoc 2.0
#502
edkerk
closed
11 months ago
1
feat: deltaG fields
#500
edkerk
closed
11 months ago
1
RAVEN 2.8.3
#499
edkerk
closed
1 year ago
4
feat: getPhylDist stores species names
#498
edkerk
closed
1 year ago
1
fix: ravenCobraWrapper with no model.c
#497
edkerk
closed
1 year ago
1
feat: getMetaCycModelForOrganism I/O BLAST structure
#496
edkerk
closed
1 year ago
1
fix: importModel with zero LB and UB
#495
edkerk
closed
1 year ago
1
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