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SystemsGenetics
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KINC
Knowledge Independent Network Construction
MIT License
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CUDA Improvements
#90
bentsherman
closed
5 years ago
0
suggestion to organize analytics/data objects into folders
#89
spficklin
closed
5 years ago
8
Cluster filter analytic
#88
spficklin
closed
5 years ago
9
Repeat GMM to find minimal clusters
#87
spficklin
closed
5 years ago
1
cuSOLVER fails to compute eigenvalues for RMT
#86
spficklin
opened
5 years ago
5
-1 values in RMT run
#85
spficklin
closed
4 years ago
2
Correlation discrepancy
#84
JordanLittle98
closed
5 years ago
5
Scaling RMT to large GEMs
#83
bentsherman
closed
5 years ago
6
Integrate features from KINC.R
#82
bentsherman
closed
4 years ago
2
checkpointing
#81
spficklin
closed
5 years ago
3
Remove message
#80
spficklin
closed
5 years ago
4
Memory usage when processing a large GEM with many MPI ranks
#79
bentsherman
closed
4 years ago
2
Loss of some sample information in CCM file during Similarity
#78
bentsherman
closed
5 years ago
9
Usage Instructions for KINC on Palmetto update
#77
mrbende
closed
5 years ago
1
Add option to use GPU acceleration in RMT
#76
bentsherman
closed
5 years ago
1
Examine the performance impact of using Qt
#75
bentsherman
closed
5 years ago
3
Segfault for large-scale GMM CPU runs
#74
bentsherman
opened
5 years ago
2
add cluster mean and variance to CMX file.
#73
spficklin
closed
4 years ago
7
Consistent BLAS libraries
#72
4ctrl-alt-del
closed
5 years ago
12
Read the Docs for KINC
#71
spficklin
closed
5 years ago
1
Docker for KINC
#70
spficklin
closed
5 years ago
1
Power analysis filtering
#69
spficklin
closed
5 years ago
2
Support "R-ready" GEM files in import-emx
#68
bentsherman
closed
4 years ago
5
CUDA support
#67
bentsherman
closed
5 years ago
0
Cannot compile KINC v3.2.2 on Kamiak
#66
4ctrl-alt-del
closed
5 years ago
16
Compare GMM and VB-GMM
#65
bentsherman
closed
4 years ago
3
p-value test in Similarity analytic
#64
bentsherman
closed
4 years ago
5
Power-law thresholding analytic
#63
bentsherman
closed
4 years ago
8
KINC run rmt failing
#62
mrbende
closed
5 years ago
7
Persistent Settings
#61
spficklin
closed
5 years ago
3
Confusing extract analytic dialogue
#60
spficklin
closed
5 years ago
1
KINC isn't using GPUs.
#59
spficklin
closed
5 years ago
6
Command-line 'Extract Network' fails to recognize output
#58
mrbende
closed
5 years ago
4
GMM = incorrect correlation values
#57
spficklin
closed
5 years ago
14
Can not type after a "." in the "Execute Extract Network" for the KINC GUI
#56
JohnHadish
closed
5 years ago
9
GUI should launch from dir that it was run in
#55
JohnHadish
closed
5 years ago
5
Cloning Access to ACE.git
#54
mrbende
closed
5 years ago
0
Outlier removal produces incorrect results
#53
bentsherman
closed
5 years ago
1
Do we need the transform setting in ExpressionMatrix?
#52
bentsherman
closed
5 years ago
4
OpenCL error OUT_OF_RESOURCES in similarity with --clusmethod=gmm
#51
bentsherman
closed
5 years ago
8
Update comments
#50
bentsherman
closed
6 years ago
0
GSL error with RMT on yeast data
#49
spficklin
closed
6 years ago
3
Wrong input args for KINC cause MPI to hang.
#48
spficklin
closed
6 years ago
2
Unknown error with RMT.
#47
spficklin
closed
6 years ago
2
Compile issues
#46
spficklin
closed
6 years ago
4
Save sample string with 4-bit elements in CCM
#45
bentsherman
closed
6 years ago
3
Use all GPUs?
#44
spficklin
closed
6 years ago
4
KINC not using all GPUs?
#43
spficklin
closed
6 years ago
3
Suggested changes to similarity analytic
#42
spficklin
closed
6 years ago
3
Parallel random number generator for analytics that use MPI
#41
bentsherman
closed
5 years ago
3
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