TGAC KAT issues - Githubissues

TGAC / KAT

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

http://www.earlham.ac.uk/kat-tools

GNU General Public License v3.0

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issues

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Kat comp x-axis

#139 vmixao closed 4 years ago
2
kat: double free or corruption (fasttop)

#138 lufuhao opened 4 years ago
0
interpreting the image of cold

#137 dcopetti closed 4 years ago
2
Puzzled spectra_cn plot by comparison Hi-C reads to genome assembly

#136 bioming closed 5 years ago
1
Extracting sequences of kat comp 2x multiplicity kmers

#135 MrKevinDC closed 3 years ago
2
Failing to find installed python modules

#134 krobison13 closed 3 years ago
1
Is KAT comp 0 or 1-based indexing

#133 malonge closed 5 years ago
2
how to explain the shared distinct kmers so small compared to shared found in each individual hash?

#132 wul88 closed 4 years ago
1
Installation problem: libboost_timer.so.1.66.0

#131 martynakgajos closed 3 years ago
2
kat comp

#130 wul88 closed 5 years ago
2
Does kat cold exclude low frequency k-mers?

#129 malonge closed 5 years ago
2
kat_distanalysis.py

#128 AmaliT closed 4 years ago
8
error when installing using a prefix directory

#127 najoshi opened 5 years ago
1
third input of kat comp function

#126 JennyHTLee opened 5 years ago
0
Bionano scaffolding and lost kmers

#125 gbroggin closed 3 years ago
3
Installing kat using anaconda3

#124 Freddiedud opened 5 years ago
10
kat filter seq does not take gzipped fastq files

#123 antunderwood closed 5 years ago
4
Stalling at the make step

#122 NicMAlexandre closed 5 years ago
1
Installing Kat command when disabling pykat

#121 NicMAlexandre closed 5 years ago
3
Error: Couldn't open connection to gnuplot

#120 foala closed 3 years ago
1
KAT cannot import numpy in Singularity container

#119 bmichanderson closed 5 years ago
8
Kat comp unable to read input fastq file

#118 mrimis closed 5 years ago
4
kat comp fails during plotting

#117 unode closed 3 years ago
1
Large, plant genome & multiple input files

#116 AllisonStander closed 5 years ago
6
KAT gives wrong count in test with k=7 on e.coli genome

#115 bjclavijo closed 3 years ago
0
Calculating heterozygosity rates

#114 kkowalden opened 6 years ago
1
Py_Initialize() must be called before Py_GetPath()

#113 wpoely86 closed 1 year ago
0
Changes from V2.3.4 to V2.4.1?

#112 arangrhie closed 6 years ago
4
interpreting a reads-assembly comparison

#111 dcopetti closed 5 years ago
12
zlib not found when running KAT (although found when compiling KAT)

#110 jflot closed 6 years ago
3
Update using.rst

#109 ethering closed 6 years ago
2
Fixed links on homepage

#108 Benjamin-Lee closed 6 years ago
1
Install KAT from source to user home directory

#107 pbravakos closed 5 years ago
6
wsdl

#106 MAFellah closed 5 years ago
0
limit the data size for count kmer

#105 orangeSi closed 6 years ago
2
distanalysis.py plotting broken

#104 duceppemo opened 6 years ago
3
Understanding comparison plots between PE-lib and an assembly

#103 mmokrejs closed 5 years ago
1
Cannot find scripts during unit tests

#102 maplesond closed 6 years ago
15
kat_plot_density: NameError: name 'colormaps' is not defined

#101 mmokrejs closed 6 years ago
6
kat comp: Uncaught exception of type std::runtime_error: Hash full

#100 mmokrejs opened 6 years ago
9
Make it clear what output files will be created

#99 mmokrejs closed 3 years ago
7
kat comp: Error: Parsing Command Line: too many positional options have been specified on the command line

#98 mmokrejs closed 3 years ago
4
kat_plot_spectra_mx: ValueError: zero-size array to reduction operation maximum which has no identity

#97 mmokrejs opened 6 years ago
16
Upgrade bundled jellyfish to avoid python name conflict

#96 mmokrejs closed 6 years ago
2
LaTeX Error: File `fncychap.sty' not found.

#95 mmokrejs closed 6 years ago
3
scripts/setup.py does not respect DESTDIR variable when installing file (to a temporary location)

#94 mmokrejs closed 3 years ago
116
src/jellyfish_helper.cc:233:91: error: no matching function for call to 'jellyfish::mer_overlap_sequence_parser<jellyfish::stream_manager<__gnu_cxx::__normal_iterator<const char* const*, std::vector<const char*> > > >::mer_overlap_sequence_parser(unsigned int&, int, int, int, StreamManager&, const std::vector<short unsigned int>&)'

#93 mmokrejs closed 6 years ago
3
libtool: error: cannot determine absolute directory name of '../deps/boost/build/lib'

#92 mmokrejs closed 6 years ago
18
Fix: Name clashes between type 'str' and local variable 'str'

#91 hdetering closed 6 years ago
1
kat plot spectra-mx: python error

#90 fwhelan closed 6 years ago
8

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