diadem

A feature-centric DIA search engine

Current stage

Under development. We are happy yo take ideas and questions! Feel free to start an issue!

Installation

git clone git@github.com:TalusBio/diadem.git
cd diadem
pip install .
# pip install -e ".[dev,profiling,test]" # for development install

Usage

Command line usage

# All commands
diadem --help

# See the help for the search functionality
diadem search --help
diadem --data_path {myfile.mzML/myfile.d/myfile.hdf} \
    --fasta myfasta.fasta \
    --out_prefix my_directory/my_results \
    --mode dia \
    --config myconfig.toml

Release milestones

• [ ] Quantification module
• [ ] Stable quant module
• [ ] RT alignment module