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Teichlab
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bracer
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
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Keep track of ambiguity?
#33
scharch
closed
5 years ago
1
Output from fasta submission
#32
NicolasHipp
opened
5 years ago
1
build without D causes IgBlast to crash
#31
scharch
opened
5 years ago
4
Cannot run the docker image
#30
NicolasHipp
closed
5 years ago
1
Fixed compatibility with newer IgBlast versions and added comments
#29
idalind
closed
5 years ago
0
Fix IgBlast and Kallisto compatibility
#28
idalind
closed
5 years ago
0
getting transcriptome files from gencode code broken link
#27
michael-swift
closed
5 years ago
2
linalgerror
#26
michael-swift
closed
5 years ago
2
Memory requirements in Summarise
#25
JohnMCMa
opened
5 years ago
3
Transcriptome files
#24
idalind
closed
6 years ago
0
Change-o/DefineClones.py ceases to have subcommands after 2018-01-10
#23
JohnMCMa
closed
6 years ago
1
bracer test failed on Recombinant-derived reads with Biopython errors
#22
JohnMCMa
closed
6 years ago
1
No subdirectories generated after assemble step
#21
Linda-Lan
closed
5 years ago
10
Kallisto Transcriptomes
#20
JohnMCMa
closed
6 years ago
3
run test_data failed
#19
Linda-Lan
opened
6 years ago
4
Fix sam to fastq read 2 write bug
#18
dcroote
closed
6 years ago
1
Add option to skip transcriptome quantification
#17
dcroote
opened
6 years ago
4
Implement Travis CI for testing with Docker
#16
dcroote
closed
4 years ago
0
Testing - CI?
#15
dcroote
opened
6 years ago
1
missing bracer.conf
#14
ibseq
opened
6 years ago
10
Conda environment
#13
idalind
opened
6 years ago
0
Add compatibility with bowtie 2.3 versions
#12
idalind
closed
1 year ago
1
Bracer test failing at Trinity step with empty read files
#11
transcriptomics
closed
5 years ago
6
UnicodeDecodeError
#10
jcgrenier
closed
6 years ago
2
conda environment and test difference
#9
dkoppstein
closed
6 years ago
9
Docker images not working
#8
wyattmcdonnell
closed
6 years ago
3
Fixed bug in detection of trimmed reads for single-end data
#7
idalind
closed
6 years ago
0
A compatibility with Networkx v2.0
#6
mstubb
closed
1 year ago
2
stopped in silico read normalization for new versions of Trinity
#5
idalind
closed
6 years ago
0
created a Docker container
#4
mstubb
closed
6 years ago
0
Fix install
#3
idalind
closed
6 years ago
0
added test
#2
boombard
closed
7 years ago
0
Added BCR raw_seq files for Mmus
#1
idalind
closed
7 years ago
0
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