Introduction

This repo stems from the biothings-data-parser-sample code, and is used to parse PrimateAI data for Biothings Studio. A small sample dataset is also provided.

Sample Entry

{
    "_id": "chr10:g.1046704C>T",
    "primate_ai": {
        "chrom": "10",
        "pos": 1046704,
        "ref": "C",
        "alt": "T",
        "ref_aa": "R",
        "alt_aa": "C",
        "pos_strand": true,
        "trinucleotide_context": "CCG",
        "ucsc_gene": "uc001ift.3",
        "exac_coverage": 45.49,
        "primate_dl_score": 0.849114537239
    }
}