The-Sequence-Ontology Specifications issues

The-Sequence-Ontology / Specifications

GFF and GVF specification documents

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Fix typos in specs

#39 cmdcolin opened 2 months ago
0
What is the "reserved meaning" of an ampersand (&) in column 9?

#38 dtdoering opened 1 year ago
0
Multiple sequences in a single file

#37 Pigrenok opened 1 year ago
0
Phase missing in example section GFF3

#36 corneliusroemer opened 2 years ago
0
typo: insert missing period `.` at sentence break between `exception`…

#35 corneliusroemer opened 2 years ago
0
fix: capitalize `cds` -> `CDS` in SO lookup table

#34 corneliusroemer opened 2 years ago
0
typo: fix `EDEN2` -> `EDEN.2`

#33 corneliusroemer opened 2 years ago
0
typo: fix 'an' -> 'and'

#32 corneliusroemer opened 2 years ago
0
Protein to nucleotide matches over introns

#31 darcyabjones opened 2 years ago
1
SO subclasses of "match" incorrect

#30 darcyabjones opened 2 years ago
1
Can't access "Ontology Associations and DB Cross References" files

#29 garrettjstevens opened 2 years ago
2
Trailing semicolons at GFF3 attributes should be avoided or ignored?

#28 heavywatal opened 2 years ago
1
Request to modify text describing 'score' column and to add a score pragma.

#27 ekcannon opened 2 years ago
0
Application for a text/gff3 Media Type ?

#26 charles-plessy closed 4 years ago
15
Fix Typos

#25 lbergelson closed 4 years ago
1
Fix #16 + cosmetic changes

#24 Juke34 closed 4 years ago
0
gff3 header delimiter

#23 Juke34 opened 4 years ago
0
Clarification on the use of the sequence region directive.

#22 darcyabjones closed 2 years ago
2
Remove typo

#21 nsoranzo closed 4 years ago
0
Difference between phase and frame is unclear in the GFF3 spec

#20 jbethune closed 3 years ago
4
Allow a mapping between labels and ontology term IDs in the header of GFF

#19 cmungall opened 5 years ago
0
Is there a single canonical validator, or multiple implementations?

#18 cmungall opened 5 years ago
15
Citing the GFF3 spec

#17 arendsee opened 5 years ago
0
Gap attribute - CIGAR description - dead link

#16 Juke34 closed 4 years ago
0
why there is no gene_id, transcript_id in the example gff file given in .md file?

#15 corn23 opened 6 years ago
2
Encoding of GFF3 files

#14 hsiaoyi0504 closed 4 years ago
1
Clarification of GFF3 "Programmed frameshift" example

#13 tmgreen opened 6 years ago
6
Questions/Clarifications for next GFF3 version

#12 jorvis opened 6 years ago
0
Code chunk formatting problem

#11 hpages closed 6 years ago
6
Programmed frameshift example

#10 nathanweeks closed 6 years ago
1
A few minor corrections

#9 arendsee opened 7 years ago
0
GVF MD file

#8 kmhernan closed 7 years ago
1
Update SO term referenced in "column 3 Type" definition

#7 thefferon closed 7 years ago
0
Precision about the 9th column

#6 Juke34 closed 6 years ago
1
typo error

#5 Juke34 closed 7 years ago
6
'@' Variant_seq option defined in introduction but not in Variant_seq definition section

#4 thefferon opened 8 years ago
2
Broken links to GFF3 specifcation.

#3 diekhans closed 7 years ago
1
GFF3: Phase > feature length not clearly defined

#2 satta opened 8 years ago
8
added no_variation, minor edits

#1 thefferon closed 8 years ago
0