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The-Sequence-Ontology
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Specifications
GFF and GVF specification documents
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Fix typos in specs
#39
cmdcolin
opened
2 months ago
0
What is the "reserved meaning" of an ampersand (&) in column 9?
#38
dtdoering
opened
1 year ago
0
Multiple sequences in a single file
#37
Pigrenok
opened
1 year ago
0
Phase missing in example section GFF3
#36
corneliusroemer
opened
2 years ago
0
typo: insert missing period `.` at sentence break between `exception`…
#35
corneliusroemer
opened
2 years ago
0
fix: capitalize `cds` -> `CDS` in SO lookup table
#34
corneliusroemer
opened
2 years ago
0
typo: fix `EDEN2` -> `EDEN.2`
#33
corneliusroemer
opened
2 years ago
0
typo: fix 'an' -> 'and'
#32
corneliusroemer
opened
2 years ago
0
Protein to nucleotide matches over introns
#31
darcyabjones
opened
2 years ago
1
SO subclasses of "match" incorrect
#30
darcyabjones
opened
2 years ago
1
Can't access "Ontology Associations and DB Cross References" files
#29
garrettjstevens
opened
2 years ago
2
Trailing semicolons at GFF3 attributes should be avoided or ignored?
#28
heavywatal
opened
2 years ago
1
Request to modify text describing 'score' column and to add a score pragma.
#27
ekcannon
opened
2 years ago
0
Application for a text/gff3 Media Type ?
#26
charles-plessy
closed
4 years ago
15
Fix Typos
#25
lbergelson
closed
4 years ago
1
Fix #16 + cosmetic changes
#24
Juke34
closed
4 years ago
0
gff3 header delimiter
#23
Juke34
opened
4 years ago
0
Clarification on the use of the sequence region directive.
#22
darcyabjones
closed
2 years ago
2
Remove typo
#21
nsoranzo
closed
4 years ago
0
Difference between phase and frame is unclear in the GFF3 spec
#20
jbethune
closed
3 years ago
4
Allow a mapping between labels and ontology term IDs in the header of GFF
#19
cmungall
opened
5 years ago
0
Is there a single canonical validator, or multiple implementations?
#18
cmungall
opened
5 years ago
15
Citing the GFF3 spec
#17
arendsee
opened
5 years ago
0
Gap attribute - CIGAR description - dead link
#16
Juke34
closed
4 years ago
0
why there is no gene_id, transcript_id in the example gff file given in .md file?
#15
corn23
opened
6 years ago
2
Encoding of GFF3 files
#14
hsiaoyi0504
closed
4 years ago
1
Clarification of GFF3 "Programmed frameshift" example
#13
tmgreen
opened
6 years ago
6
Questions/Clarifications for next GFF3 version
#12
jorvis
opened
6 years ago
0
Code chunk formatting problem
#11
hpages
closed
6 years ago
6
Programmed frameshift example
#10
nathanweeks
closed
6 years ago
1
A few minor corrections
#9
arendsee
opened
7 years ago
0
GVF MD file
#8
kmhernan
closed
7 years ago
1
Update SO term referenced in "column 3 Type" definition
#7
thefferon
closed
7 years ago
0
Precision about the 9th column
#6
Juke34
closed
6 years ago
1
typo error
#5
Juke34
closed
7 years ago
6
'@' Variant_seq option defined in introduction but not in Variant_seq definition section
#4
thefferon
opened
8 years ago
2
Broken links to GFF3 specifcation.
#3
diekhans
closed
7 years ago
1
GFF3: Phase > feature length not clearly defined
#2
satta
opened
8 years ago
8
added no_variation, minor edits
#1
thefferon
closed
8 years ago
0