Ingest drug synonyms - Githubissues

TheDataRideAlongs / ProjectDomino

Scaling COVID public behavior change and anti-misinformation

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Ingest drug synonyms #27

Closed lmeyerov closed 4 years ago

lmeyerov commented 4 years ago

-- Load drugbank.ca -- Identify drug names and synonyms -- Pair against clinical trial drug names -- Write to neo4j -- Run continuously via prefect.io

007vasy commented 4 years ago

I can start on this on Sunday (Melbourne Sunday). After I done with a POC how can I integrate this? when will the full code will be available for local runs?

webcoderz commented 4 years ago

i have already integrated the drug synonyms stuff in the drugbank_vocab notebook, there is also a schema for their db in the notebook directory, > drugbank.zip its a .xml

lmeyerov commented 4 years ago

Great

@ZiyaoWei - tips for making this into a scheduled prefect.io ingest flow, like a daily refresh?

@bechbd - tips for making this part of the graph schema wrt the provenance etc. fields we need?