issues
search
TheEvergreenStateCollege
/
bioinformatics
Plant genome sequencing
2
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Merge sysmem changes
#50
learner-long-life
opened
3 weeks ago
0
Taylor's suffix tree property checks as unit tests
#49
learner-long-life
closed
3 weeks ago
0
Suffix Tree Visualizer
#48
pointmeathesky
closed
1 month ago
0
Git LFS and .gitignore
#47
learner-long-life
closed
1 month ago
1
Ricard and Dom's work on low system memory in rusty-plants
#46
learner-long-life
closed
1 month ago
2
Comment and strip out unneeded parts of suffix_tree.rs
#45
AbyssalRemark
opened
1 month ago
0
WIP: start sqlx access in Rust
#44
learner-long-life
opened
1 month ago
0
Crowded suffix tree rendering
#43
learner-long-life
opened
1 month ago
4
Create a test database in NodeJS + Prisma to read back
#42
learner-long-life
opened
1 month ago
2
Placeholder cpp-plants project
#41
learner-long-life
opened
1 month ago
0
pnpm build warnings in web
#40
learner-long-life
opened
2 months ago
0
Add starter NextJS web project
#39
learner-long-life
closed
2 months ago
0
How to partially render a suffix tree from db
#38
learner-long-life
opened
2 months ago
1
Visualize suffix links from duplicate edges
#37
learner-long-life
opened
2 months ago
1
Brainstorming web UI ideas
#36
learner-long-life
opened
2 months ago
1
Record a screenshare video stepping through and narrating Ukkonen's algorithm
#35
learner-long-life
opened
2 months ago
0
Continue explaining Ukkonen's algorithm
#34
learner-long-life
closed
1 month ago
1
Select optimal portion of suffix tree to offload to database
#33
learner-long-life
opened
2 months ago
1
Write part of suffix tree to database
#32
learner-long-life
opened
2 months ago
0
DB queries to extend suffix trees
#31
learner-long-life
closed
2 months ago
0
Add Dominic's google slides link
#30
learner-long-life
closed
1 month ago
0
Fail gracefully when system free memory is too low
#29
learner-long-life
opened
2 months ago
0
Consider ways to model edge string fragments in database schema
#28
learner-long-life
opened
2 months ago
1
Gavin's work on read alignment
#27
learner-long-life
closed
2 months ago
2
Test functions should not contain the word "test"
#26
AbyssalRemark
opened
3 months ago
0
Reorganize directories for rust, c++, web
#25
learner-long-life
closed
3 months ago
1
Cleanup
#24
poperigby
closed
3 months ago
0
Suffix tree rewrite
#23
Gavin-Bowers
closed
3 months ago
0
Fix issues caused from rename to smarty_plants
#22
poperigby
closed
3 months ago
1
Update Cargo.toml
#21
poperigby
closed
3 months ago
0
(Temporary) Reorganize howtocpp suffix tree printout and Rust suffix tree tests.
#20
learner-long-life
closed
3 months ago
0
Possibly make repo private
#19
learner-long-life
opened
4 months ago
1
Create Rust CI
#18
poperigby
closed
4 months ago
0
Remove cruft
#17
poperigby
closed
4 months ago
1
Edit distance
#16
poperigby
closed
3 months ago
4
Edit distance dynamic programming approach
#15
learner-long-life
closed
4 months ago
0
Pull request for rewrite branch as requested at meeting today
#14
TW-Starbuyer
closed
3 months ago
1
Remove old CLI
#13
poperigby
closed
4 months ago
0
Array2D
#12
poperigby
closed
4 months ago
1
Add unit-test-in-progress for suffix tree.
#11
learner-long-life
closed
4 months ago
1
Modify SuffixTree:find_substring to return all occurrences
#10
learner-long-life
opened
4 months ago
0
Add a test for SuffixTree::find_substring method
#9
learner-long-life
closed
1 month ago
1
Write unit tests for standard suffix tree cases
#8
learner-long-life
opened
4 months ago
1
Some syntax and path fixes
#7
learner-long-life
closed
4 months ago
1
Web user interface
#6
learner-long-life
closed
1 month ago
2
Write instructions to download fragments / genome
#5
learner-long-life
closed
5 months ago
2
DNA mRNA RNA and others, what are we working with?
#4
AbyssalRemark
opened
5 months ago
1
suffix trees for finding largest common substring
#3
AbyssalRemark
opened
5 months ago
5
checking backwards and inverse.
#2
AbyssalRemark
opened
5 months ago
1
Is the reconstructed sequence a line or a loop?
#1
learner-long-life
closed
5 months ago
1
Next