Smarty Plants

interactive data structures and algorithms for genome analysis

Getting Started

Clone this repository locally

git clone git@github.com:TheEvergreenStateCollege/smarty-plants.git

Install Git Large File Support (LFS) for your environment

https://git-lfs.com/

Pull the large genome data for Mimosa pudica which is our initial test case.

git lfs pull

Explore and become familiar with the experimental data in FASTA format by following the data tutorial.

Contributor Guidelines

The main branch is protected. Please develop on a branch and create pull requests following this [Git Workflow], and request a review from at least one other person before merging.

In your PR description:

• Summarize your change
• What tests have you added to verify that your change works as intended?
  • can be a Rust unit test, or a simple one-line call in main function, or a shell command.
• What feedback do you want from the reviewer?

Reviewers:

• Check out this branch and compile and test the change following the description.
• Give style feedback as well as logic / correctness feedback.

Note: this will slowdown development on main so that teammates have a chance to learn. Please continue developing as fast as you like on your own dev branch.